K13635

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13635

Determination of introduced cDNA(s)

  • J023040O04 - Rice Full-length cDNAs - Original: J023040O04

    full reading [+] show sequence

    Nucleotide sequence: J023040O04 - full reading 
    GGGCAAATCA CCGCCCCCTC CACCCGGATC CCTCGCCTCC GCGTCGCCGG 
    TCTGCACTCG CGCCGCCCCC GGTCAGCCCG CGTCGCCGGT CCCCATCATC 
    GGCGGCGCCG CCCCCGATCC CCCTCGATCT GCACTGCGCC CGACGAGTTT 
    AACCCTTGCA CGGCTCTGCT GGAGTGTGAG TGCAAGAACG GCGCCGCCGC 
    CGAGAACACG CTGCTCCGGG CGGGCTACGG CGGGTGGCTG CTCTACTCGG 
    CGGCGTCGGC GGGGGACATG GCGTTCGTAC AGGAGCTCAT GGACAGGGAC 
    CCCTTGCTGG TGTTTGGCGA GGGCGAGTAC GGCGTGACGG ACATGTTCTA 
    CGCCGCCGCG AGGGGTGGGA ACGCCGAGGT GTTCAAGCTG CTGCTGGACC 
    ACGCCATGTC GCCGAGGTGC TCGACGAATT GTCCCAACAG GGAAGGCGCA 
    GCAGCGGTGG TGGCTGCTCC TCGGTGTTCT GGCTGGAAAT GATGAGTAGG 
    GCAGTCCACG CCGCCGCGAG GGGCGGCAAC GTGGAGATGC TGAGGGAGCT 
    CATCGAGCGT CGCTCCGACG TGTCGGAGTA TCTCGACTTC CGTGGATCCA 
    CCGTGCTGCA TGCTGTTGCA GGTAGAGGGC AGCTAGAGTC GAGGCATCTA 
    CTTCTTGGCC ATTGCTTACT TCTGTAAAAT GCTTGATACA GTAAAATTTT 
    TCTTTGTGCC AATATGGATG ACAAAGGTAG ATCCTCATTT CATCAGAATG 
    TTTGGGTGAA ATGTTTCCAT ACCCAATATC TTTTGACGTT ATGAAACCCA 
    TTTTGCCTTT AGATGCGCTG CAGGTTATTA TCTGGTAATC GATTTCAACA 
    TGAATATTAA AGTTGCTCTT GATCATG

    Gene models with high sequence identity

    1. AT3G04140.1 [+] show detail - Ankyrin repeat family protein
      E-value: 2e-34; Score: 45.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ANK REPEAT-CONTAINING 0.00042
    HMMPanther ANKYRIN REPEAT-CONTAINING 0.00042
    Gene3D Ankyrin repeat-containing domain 0.00062
    ProfileScan Ankyrin repeat-containing domain 11.824
    superfamily Ankyrin repeat-containing domain 0.00000063
    superfamily Ankyrin repeat-containing domain 0.0000003

    See the detailed result >

    AT3G04140.1

    Model type
    Protein coding
    Short Description
    Ankyrin repeat family protein
    Computational Description
    Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G01750.1); Has 23671 Blast hits to 13225 proteins in 615 species: Archae - 38; Bacteria - 1852; Metazoa - 11528; Fungi - 2058; Plants - 2257; Viruses - 72; Other Eukaryotes - 5866 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR