K13701

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13701

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13701

Determination of introduced cDNA(s)

  • J013001B10 - Rice Full-length cDNAs - Original: J013001B10

    full reading [+] show sequence

    Nucleotide sequence: J013001B10 - full reading
    GACAGTCTCC CCCTTTCTGA ACACAGCACC ACCCCTTCTG CTGCATCTCC 
    CACCTCCCTC TGAATTGTGG GCCTGAGGCG ATGGCGGCGC TCGCCCCGTC
    CAAGATGCTC GGCACCCGGC TCAACTTCGC CGGCTCCTCC CGCTACGCCA
    CCGCGGCACC GACCACCGGA GCGCAGAAGA TCGTCTCCCT CTTCAGCAAG
    AAGCCCGCCC CGAAGCCCAA GCCCGCCGCC GTCACCTCCT CGAGCCCCGA
    CATCGGCGAT GAGCTCGCCA AGTGGTACGG CCCTGACAGG AGGATCTTCT
    TGCCGGAGGG TCTCCTGGAC CGCTCAGAGG TGCCGGACTA CCTCAACGGA
    GAGGTCCCCG GAGACTACGG CTACGACCCT TTTGGCCTCA GCAAGAAGCC
    AGAGGACTTC TCCAAGTACC AGGCCTATGA GCTGATCCAT GCCAGGTGGG
    CGATGCTCGG CGCCGCTGGG TTCATCATCC CCGAGGCCTG CAACAAGTTT
    GGCGCAAACT GCGGCCCCGA GGCCGTCTGG TTCAAGACCG GCGCCCTTCT
    CCTGGACGGC AACACCCTCA ACTACTTCGG CAACAGCATC CCCATCAACC
    TCATCGTCGC CGTCGCCGCC GAGGTCGTCC TCGTCGGCGG CGCCGAGTAC
    TACCGGATCA TCAACGGCCT GGATCTGGAG GACAAGCTCC ACCCAGGTGG
    CCCATTCGAC CCGCTGGGGC TGGCGAGCGA CCCGGACCAG GCGGCGCTGC
    TGAAGGTGAA GGAGATCAAG AACGGGCGGC TGGCCATGTT CTCCATGCTG
    GGGTTCTTCA TCCAGGCCTA CGTCACCGGC GAGGGCCCCG TCGAGAACCT
    CTCCAAGCAC CTCAGCGACC CCTTCGGCAA CAACCTGCTC ACCGTCATCT
    CCGGCGCCGC CGAGAGGACG CCCAGCCTGT AAACATCTCG CCGCCGGCGA
    CGCTGGCTGG CCTCAAGTTA ATTTTAATCT TACCCGGGAA GAAGAAGGGA
    GGAGTTTGAG AAGGGTGGAA GAATGTGTTA AATGTACGTG TAAATTATCG
    TCGAGTTGGG AGATGAATTT GAAAACCTGT TCATTCTGAT CTTCTGATAG
    G

    Gene models with high sequence identity

    1. AT4G10340.1 [+] show detail - light harvesting complex of photosystem II 5
      E-value: 3e-116; Score: 415.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Chlorophyll a-b binding protein 1e-61
    HMMPanther Chlorophyll A-B binding protein 1.5e-114
    HMMPfam Chloroa_b-bind 1.4e-44

    See the detailed result >

    AT4G10340.1

    Model type
    Protein coding
    Short Description
    light harvesting complex of photosystem II 5
    Curator Summary
    photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus
    Computational Description
    light harvesting complex of photosystem II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2360 Blast hits to 2295 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR