K13704

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13704

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13704

Determination of introduced cDNA(s)

  • J023112F10 - Rice Full-length cDNAs - Original: J023112F10

    full reading [+] show sequence

    Nucleotide sequence: J023112F10 - full reading 
    GTGGGCATCA CTTGCCCGCA AAATTGCAAT AACTCACCAT AATATTTCAA 
    AATAATTCGA CGGAATTCAT TCGCTCGCGC CGTCTCCGAA ACCGAATCCA 
    TTTCCTGATC CAGCAAAGGA CACAGAGAGA GATCCCATCT CGTCCTCGTC 
    GCCTCCGCCT CGTGAGCTCC ACTCACCTAC CCCACTTCCT CTCCTCGCTT 
    CGGCCGCGGC CCCAAACCCT AACCCTCCCC GCGGCGATCC CGATGGCCAC 
    CACCTCCCGC CGATCCCTCC ACGCCCTCCT CGGCGGCGGC GCAGTCGCCG 
    ACTTGGTGCT GTGGCGGCGG AGGAACGTGT CCGCGGCGGC CGTGGCGGGC 
    GCCACGGCGG TGTGGTTCCT CTTCGAGCGC GCGGGGTACA GCTTCCCGTC 
    AGTCATGGCC AACGCCCTGC TCCTCCTCGT CGCCATCCTC TTCTTCTGGG 
    CCAAGTCCGC CTCGCTGCTC AACAGGCCTC TTCCACCACT CCCTAAACTA 
    GAGGTCTCAG ATGTGGTTGT TGAGAAAGCT GCAGATCGGG CTCTTGTATG 
    GATCAACAAG GTGTTGGCTG TTGGCCATGA TATTGCCATC AAGAGAGATA 
    GGAGTGTTTT TATAAAGGTT ATATTGATTT TATGGGTGGT TTCATACATT 
    GGAATGCTCT TCAACTTCCT TACGCTCATT TACATTGGTG TAATGTTTTC 
    TCTGTTAGTT CCACCATTGT ATGAGAAGTA CCAGGACCAA GTCGATGAAA 
    AGATTGGTAT GGCGCACAGT GTACTATCAA GGCACTTAGA TACCATCATT 
    AGCAAGACTG GAGAATCAAC CAAGCAAAAG AAGACTGAGT AACCGGTGTT 
    TTTGCTACAT TGGGAACCTC TTTTGTCATA TGTGGTTGGT CATGAACCTC 
    GTCAGTTACT CTCCATACCT GTGAACCACC ACTGGAAATA TTCTTGGATA 
    TCGAAGATGT CATGTTTGAC TGCTGATGTA GTTTACATGC ACTCTGTTCA 
    ATTTGAGAAA TGGAATGCTT TGTATATTTT TTCAAGTAAC ATGACACATG 
    CTGAGGTTTA TCATGGGCAC ATATCTTGTG GATAATGATA TATACTTTTC 
    CCCTGAAATC ATTTTCTGTA GCCGGCATAT ACAAATATGT TGGTTGCTGG 
    TGCACC

    Gene models with high sequence identity

    1. AT3G19460.1 [+] show detail - Reticulon family protein
      E-value: 2e-33; Score: 140.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Reticulon 33.33
    HMMPfam Reticulon 1.8e-47
    HMMPanther RETICULON-RELATED (PLANT) 1.4e-67
    HMMPanther Reticulon 1.4e-67

    See the detailed result >

    AT3G19460.1

    Model type
    Protein coding
    Short Description
    Reticulon family protein
    Computational Description
    Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G15280.1); Has 1108 Blast hits to 1108 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 644; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR