K13707

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13707

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13707

Determination of introduced cDNA(s)

  • J013047J06 - Rice Full-length cDNAs - Original: J013047J06

    full reading [+] show sequence

    Nucleotide sequence: J013047J06 - full reading
    GCCCCAAGGC CACAAGCCTC CATCTACCGC TCTCACTTCT CTCGCAGAGA 
    TGGCGCACGC CTTCGCCGGC GGCACCTCCG CCATCTGCCG CTGCCCCCAC
    GACCCCGGCC GAGCCGCCCT CGTATCCCGC CCTCGCCACC GCCTCCGTGT
    CCTCGCGTCG TCCCTACCCA CGCCGGCCAT CGAGGGCCAG GGCGTCGAGT
    TGTCGGTGAC GACTCGGCGG GGGCGGGTGC TGCCGGTGCT CAAGGACTGC
    TCCCTCCGCG TCCCTCCGGG TCAGCTCTGG ATGCTCCTCG GCCCCAACGG
    CTGCGGCAAG TCCACCCTTC TCAAGGTTTT GGCAGGATTT TTAAATCCTT
    CTTCTGGTAC AGTGTATATT AACAGGCCAT GCAGCTATGT CTTCCAAAAT
    CCCGATCACC AGGTTGTGAT GCCGACAGTG GAATCAGATG TTGCATTTGG
    TCTTGGTAAG CTCAACCTTT CGTTGGATGA GGTTAGGTCA AGAGTATCAC
    AATCACTGGA TGCTGTGGGA ATGTTAAGCT ACTCTCAAAG GCCAATCCAA
    ACTCTGAGTG GCGGGCAGAA GCAGAGAGTT GCAATTGCCG GTGCTTTAGC
    TGAAGCATCC AAAGTACTAC TACTGGATGA GCTGACCACA TTCTTGGATG
    AATACGACCA GATGGGTGTT ATCAAGGCGG TAAGGAAATC TGTAGGTGCT
    GGTGGGGAGG TTTCAGCATT GTGGGTGACC CATCGACTGG AAGAACTCAG
    ATATGCTGAT GGTGCTATTT ATATGGAAGA TGGCCAGACA ATTATTCAAG
    GTGATGTGTC TACAATATCC AAATATATAA AGAAAAAGCA AGCCCGCTAC
    TTCGGTCACT TTGAGCTTTG ATACTTGGAA TGAATATGAA GCTATGGGGA
    AATTTGCCTA CTCCTGTACA CATCATATTG TTGAAAATCA GTTTATTTTT
    TTAGGCTATT TCCCCGCAAA TTTCTTACCT CAATTCCAAG CTGTATTCTA
    CTCTCTTGCT CTTTACTTAT AGCAATGTCG ATTTGGGC

    Gene models with high sequence identity

    1. AT4G33460.1 [+] show detail - ABC transporter family protein
      E-value: 1e-78; Score: 290.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ABC transporter-like 2.2e-19
    HMMPfam Protein of unknown function DUF1602 8.3e-07
    PatternScan ABC transporter, conserved site 0
    HMMSmart ATPase, AAA+ type, core 3.2e-16
    HMMPanther COBALT ABC TRANSPORTER 1.1e-67
    HMMPanther ATP BINDING CASSETE (ABC) TRANSPORTER 1.1e-67
    Gene3D no description 1.3e-47
    superfamily P-loop containing nucleoside triphosphate hyd 8.5e-56
    ProfileScan ABC transporter-like 20.275

    See the detailed result >

    AT4G33460.1

    Model type
    Protein coding
    Short Description
    ABC transporter family protein
    Curator Summary
    member of NAP subfamily
    Computational Description
    ATNAP13; FUNCTIONS IN: transporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1); Has 407040 Blast hits to 369976 proteins in 3957 species: Archae - 7271; Bacteria - 322720; Metazoa - 9258; Fungi - 6631; Plants - 5055; Viruses - 23; Other Eukaryotes - 56082 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR