K13707

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13707

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13707

Determination of introduced cDNA(s)

  • J013047J06 - Rice Full-length cDNAs - Original: J013047J06

    full reading [+] show sequence

    Nucleotide sequence: J013047J06 - full reading 
    GCCCCAAGGC CACAAGCCTC CATCTACCGC TCTCACTTCT CTCGCAGAGA 
    TGGCGCACGC CTTCGCCGGC GGCACCTCCG CCATCTGCCG CTGCCCCCAC 
    GACCCCGGCC GAGCCGCCCT CGTATCCCGC CCTCGCCACC GCCTCCGTGT 
    CCTCGCGTCG TCCCTACCCA CGCCGGCCAT CGAGGGCCAG GGCGTCGAGT 
    TGTCGGTGAC GACTCGGCGG GGGCGGGTGC TGCCGGTGCT CAAGGACTGC 
    TCCCTCCGCG TCCCTCCGGG TCAGCTCTGG ATGCTCCTCG GCCCCAACGG 
    CTGCGGCAAG TCCACCCTTC TCAAGGTTTT GGCAGGATTT TTAAATCCTT 
    CTTCTGGTAC AGTGTATATT AACAGGCCAT GCAGCTATGT CTTCCAAAAT 
    CCCGATCACC AGGTTGTGAT GCCGACAGTG GAATCAGATG TTGCATTTGG 
    TCTTGGTAAG CTCAACCTTT CGTTGGATGA GGTTAGGTCA AGAGTATCAC 
    AATCACTGGA TGCTGTGGGA ATGTTAAGCT ACTCTCAAAG GCCAATCCAA 
    ACTCTGAGTG GCGGGCAGAA GCAGAGAGTT GCAATTGCCG GTGCTTTAGC 
    TGAAGCATCC AAAGTACTAC TACTGGATGA GCTGACCACA TTCTTGGATG 
    AATACGACCA GATGGGTGTT ATCAAGGCGG TAAGGAAATC TGTAGGTGCT 
    GGTGGGGAGG TTTCAGCATT GTGGGTGACC CATCGACTGG AAGAACTCAG 
    ATATGCTGAT GGTGCTATTT ATATGGAAGA TGGCCAGACA ATTATTCAAG 
    GTGATGTGTC TACAATATCC AAATATATAA AGAAAAAGCA AGCCCGCTAC 
    TTCGGTCACT TTGAGCTTTG ATACTTGGAA TGAATATGAA GCTATGGGGA 
    AATTTGCCTA CTCCTGTACA CATCATATTG TTGAAAATCA GTTTATTTTT 
    TTAGGCTATT TCCCCGCAAA TTTCTTACCT CAATTCCAAG CTGTATTCTA 
    CTCTCTTGCT CTTTACTTAT AGCAATGTCG ATTTGGGC

    Gene models with high sequence identity

    1. AT4G33460.1 [+] show detail - ABC transporter family protein
      E-value: 1e-78; Score: 290.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ABC transporter-like 2.2e-19
    HMMPfam Protein of unknown function DUF1602 8.3e-07
    PatternScan ABC transporter, conserved site 0
    HMMSmart ATPase, AAA+ type, core 3.2e-16
    HMMPanther COBALT ABC TRANSPORTER 1.1e-67
    HMMPanther ATP BINDING CASSETE (ABC) TRANSPORTER 1.1e-67
    Gene3D no description 1.3e-47
    superfamily P-loop containing nucleoside triphosphate hyd 8.5e-56
    ProfileScan ABC transporter-like 20.275

    See the detailed result >

    AT4G33460.1

    Model type
    Protein coding
    Short Description
    ABC transporter family protein
    Curator Summary
    member of NAP subfamily
    Computational Description
    ATNAP13; FUNCTIONS IN: transporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1); Has 407040 Blast hits to 369976 proteins in 3957 species: Archae - 7271; Bacteria - 322720; Metazoa - 9258; Fungi - 6631; Plants - 5055; Viruses - 23; Other Eukaryotes - 56082 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR