K13713

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13713

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13713

Determination of introduced cDNA(s)

  • J023104K01 - Rice Full-length cDNAs - Original: J023104K01

    full reading [+] show sequence

    Nucleotide sequence: J023104K01 - full reading 
    GGTCGGAGTC GAAATCCCCC CCCAAATAGT TGGTGGTAGC GATCAGTAGG 
    CAGGAGAGGA TTAGGAGGGA TCGGAGACCG ACATGGCGGA GGAAGGGCAG 
    CGCGGCGGCT ACAGCCGGCT CGCCGGCGAT GAGGAGGTGG CTACGGCGAG 
    CGGCGGCGGC GGCGGCGACT ACGACGAGCG GAAGCTGAGG CTGCTCGGCT 
    ACGAGCCGCA GCTCAAGCGC AACCTCTCGC TGCTGTCCAA CTTCGCGGTG 
    TCGTTCTCGA TCGTGTCGGT GCTGACGGGG ATCACGACGC TGTTCGGGAC 
    GGGGCTGCAG TTCGGCGGGC CGGCGACGAT GGTGTACGGC TGGCCCATCG 
    CCGGCGCCAT GACGCTCGTC GTCGGCCTCG CCATGGCCGA GATCTGCTCC 
    GCCTACCCGA CCTCCGGTGG CCTCTACTTC TGGAGCGCGA GGCTCTGCAG 
    CCACCGCCGC TGGGGCCCCT TCGCTTCATG GCTCACCGGC TGGTTTAACA 
    TTGTCGGACA GTGGGCGGTG ACGACCAGCG TGGACTTCTC ACTGGCCCAG 
    CTGATTCAGG TGATCATCCT GCTCAGCACT GGGGGCAACA ACGGAGGAGG 
    GTACATGGCG TCCAAGTACG TCGTGATCGC CTTCCACGCC GCCATCCTGC 
    TGAGCCACGC CGCCATCAAC AGCCTCCCCA TCACCTGGCT TTCCTTCTTT 
    GGGCAGTTCG CGGCTGCCTG GAACATGCTA GGTGTCTTTG TCCTCATGAT 
    TGCTGTGCCG ACGGTTGCTA CCGAGAGGGC CAGTGCCAAG TTTGTGTTCA 
    CCCATTTCAA CACTGAAAAC AACGCTGGGA TTCACAGTAA CTTTTACATC 
    TTCGTGCTGG GGCTCCTGAT GAGCCAGTAC ACGCTGACAG GATATGACGC 
    GTCTGCGCAT ATGACCGAGG AGACGAAGAA TGCTGACAGG AATGGCCCGA 
    TCGGCATCAT CAGCGCGATT GGGATATCGA TAATAGTAGG ATGGGGATAC 
    ATTCTTGGCA TCACCTTTGC AGTGAAGGAC ATACCTTACC TGCTGAACCC 
    CGAGAACGAT GCTGGAGGGT ATGCCATTGC TGAGGTGTTC TACCTCGCCT 
    TCAAGAGCCG GTACGGGAGC GGCATCGGCG GATCATCTGC CTAGGGATCG 
    TCGCCGTCGC GATATACTTC TGTGGCATGA GCTCGGTAAC AAGCAACTCA 
    AGGATGGCGT ACGCGTTCTC GAGAGACGGC GCGATGCCAT TGTCGTCCGT 
    CTGGCACAAG GTCAACAAGC ACGAGGTGCC GATCAACGCC GTCTGGCTCT 
    CGGCCCTCAT CTCCCTCTGC ATGGCATTGC CGTCGCTGGG GAGCTTGGTG 
    GCGTTCCAGG CGATGGTGTC GATCGCGACG ATCGGGCTGT ACGTGGCGTA 
    CGCGCTGCCG ATCCTGTTCA GGGTGACGCT GGCGCGGAAG CACTTCGTGC 
    CGGGGCCCTT CAACCTGGGG CGGTGCGGCG TCGCCGTCGG CTGGGCGGCG 
    GTGCTGTGGG TGGCCACCAT CACCGTGCTC TTCTCGCTGC CGGTGTCGTA 
    CCCGGTCACC AAGGACACCC TCAACTACAC CCCCGTCGCC GTCGGCGGCC 
    TCTTCCTCCT CGTCCTCTCC TCCTGGCTCC TCAGCGCCAG GCACTGGTTC 
    AAAGGCCCCA TCACCAACCT CGATGGCTAG CTAAGCCAAG ATTGAGGCTT 
    TGGTTTTGGT TTTCGCCGGT GGATATGGAA ATGCAGTGGG AGATGGAAGA 
    ATCGTCGTCG ATGATCGGAG GCGTTTCAGG TGGGAGGAGA AGTATAACTG 
    AAGAACAGGT AAGAAGATGA TCTGGAAGGG AAACGGGAGC ATATCATGTC 
    ATGGTGGTGG TGTTGTGATT AGTTGTTGAT TTGTTCAGCG AAATTATATT 
    ACGTGGAAGG GGATTATACA TTTTATACAC TGGTTGTAGA TTGACAATAT 
    GTACTAAGAA ATTGACGATT CAATTGAAGG CTAAAAGCAG CTGAAACAGT 
    TGTGG

    Gene models with high sequence identity

    1. AT2G01170.1 [+] show detail - bidirectional amino acid transporter 1
      E-value: 7e-178; Score: 256.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    PatternScan Amino acid permease, conserved site 0
    HMMPanther AMINO ACID PERMEASE-RELATED 1.7e-77
    HMMPanther Amino acid/polyamine transporter I 1.7e-77
    HMMPanther AMINO ACID PERMEASE-RELATED 4.2e-110
    HMMPanther Amino acid/polyamine transporter I 4.2e-110
    HMMPfam Amino acid permease domain 0.0000000000067
    HMMPfam Amino acid permease domain 0.0000000000005

    See the detailed result >

    AT2G01170.1

    Model type
    Protein coding
    Short Description
    bidirectional amino acid transporter 1
    Curator Summary
    Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.
    Computational Description
    bidirectional amino acid transporter 1 (BAT1); FUNCTIONS IN: arginine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); Has 15465 Blast hits to 15422 proteins in 1894 species: Archae - 296; Bacteria - 11987; Metazoa - 438; Fungi - 2169; Plants - 254; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR