K13718

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13718

Determination of introduced cDNA(s)

J023004G13 - Rice Full-length cDNAs - Original: J023004G13

full reading [+] show sequence

GACTCTCGAA GACGAATCGT AAAAGCTCAA AAAAAAAAAA GAGAAAAAAA 
GAAAAAAAAG GGAGGCGCGG CCATGGCGGG GACGGGGAGC TTCAAGGTGA 
CGAGGATCTC GGAGGGGGCG GTGAAGCCGG CGGCGGCGAC GCCGGAGGAG 
ACGCTGCCGC TGGCGTGGGT GGACCGGTAC CCGACCCACC GCGGGCTGGT 
GGAGTCGATG CACATCTTCC GGTCGGGCGC CGACGCGGCC CCGGGCGTCA 
TCCGCGACGC GCTCGCCAGG GCGCTGGTCT TCTTCTACCC GCTCGCCGGG 
CGCATCGTGG AGCCCGAGGC CGGGTCCCCC GCCATCCGGT GCACCGCCGA 
CGGCGTCTAC TTCGCCGAGG CCGCCGCCGA CTGCAGCCTG GAGGACGTCC 
GCTTCCTGGA GCGCCCCCTC CTCCTCCCCA AGGAGGACCT CGTCCCCTAC 
CCCGGCGACG ACCGCTGGGG CGTCGAGCCC CACAACACCA TCATGATGAT 
GCAGATCACC AAATTCACCT GCGGCGGGTT CGTGATGGGG CTCCGGTTCA 
ACCACGCGTC GGCGGACGGC ATGGGCGCGG CTCAGTTCAT CAACGCGGTG 
GGCGACATGG CGCGGGGGCT CCCGGAGCCG AGGGTGAAGC CGGTGTGGGA 
CAGGGAGAAG TTCCCGAACC CGAGCATCAA GCCCGGCCCC CTGCCGGGGC 
TGCCGGTGCT GGCGCTCGAC TACATCGTCC TCGACTTCCC CACCGGCTAC 
ATCGACGGCC TGAAGGCGCA GTACAAGGCG CACAGCGGCA AGTTCTGCTC 
CGGCTTCGAC GTGCTGACGG CGAAGCTGTG GCAATGCCGC ACCAGGGCAC 
TCAACCTCGA GCCCGGCGCC ACCGTGAAGC TCTGCTTCTT CGCCAGCGTG 
CGCCACCTGC TGAAGCTGGA CAGGGGGTAC TACGGCAACT CCATCTTCCC 
GGTGAAGATG TCAGCGCCGA GCGAGACGGT GCTGTCGTCG TCGGTGATGG 
AGGTGGTGGA CATGATCCGG CAGGCGAAGG AGAGGATGGC GGGGAGAGCC 
CGAGAAGGCG GAGACCCCGG GAGCAGAGGG GAGAGCAGCG CAGCCGCCAT 
GGACCGCGTG CAGCTCGTGC TCCTCGGCCT CCCCATCCTC CTCTTCTGCT 
CCGACCTCGT CACGCTCTTC GGGCCGGAGC AGCTGCCCAC CCCGCAGCCC 
GACCTGCCGC CCCACCCCAG CCCCGACGCG GCCTCCGACG CCGTCCAGCC 
CGACGACATC GCCGCCGATG CCGCCGCTTC CGCGCAGATT GCTGAGCCGC 
AGGTGGATGG GCCTGCCTCC GGCACCACCG TCGAGTTGAA GTTCTGCGCC 
TCCTGCTCTT ATAGGGGAAA TGCAGTCACC GTGAAGAAGA TGCTGGAAAC 
CTCATTTCCT GGTATTCATG TCGTTTTAGA AAATTACCCT CCACCATTCC 
CAAAACGCGC ACTCAGCAAA GCTGTACCTT TTCTTCAAGT TGGAGCAATG 
GCAACTTTAA TGGCCGGTGA TCAGATTTTC CCTAGGTTTG GAATGGTTCC 
ACCTCCATGG TACTACTCGC TCCGTGCTAA TAGATTTGGA ACAATGGCAA 
CAATCTGGCT GTTTGGCAAT TTCGCCCAGT CATTTCTACA AAGTTCTGGT 
GCCTTTGAAG TTTACTGCAA TGGACAATTG GTTTTCTCAA AATTATCCGA 
ACAGAGATTT CCCAGCGAGT TTGAGCTACG GGAGCTCATT GGCAACAGGT 
TACCAGATTC TCAATTCGGG AAAAATCTGG AAAAGGTTTG GTCATAGATG 
TTGATGTCAA GAGAGCCCAC TTCATTTACC TGCTATTTAA TTGATAGAAC 
CGCTTGAAAG TTTACGCCTA ATTGTCAATC ACATGCTATT TGTCTTCTTC 
TTTTGTGAAG GCAGGTACTT TTCTTTTTGT TGTAAATAAT GTTTTACCCT 
C

Gene models with high sequence identity

AT3G62160.1 [+] show detail - HXXXD-type acyl-transferase family protein
E-value: 1e-60; Score: 231.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Selenoprotein T	1.3e-63
HMMPfam	Transferase	9.9e-53
HMMPfam	Selenoprotein, Rdx type	3.1e-16
Gene3D	no description	1.4e-50
Gene3D	no description	3.9e-18
HMMTigr	Selenoprotein, Rdx type	9.9e-84

See the detailed result >

AT3G62160.1

Model type: Protein coding
Short Description: HXXXD-type acyl-transferase family protein
Computational Description: HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G28680.1); Has 2278 Blast hits to 2266 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2263; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR