K13730

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13730

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13730

Determination of introduced cDNA(s)

  • J023103O13 - Rice Full-length cDNAs - Original: J023103O13

    full reading [+] show sequence

    Nucleotide sequence: J023103O13 - full reading 
    GGTGTGCCGC GGCGACGGCG GAGGCGACGA GGCCGAAGCC GCCGGCGGTC 
    TGGCCGGCGA TGGAAGGGGG GGGGGGGACC CGCCGGCCGT AGGCGCGATG 
    GGTCGGCCGC CCAGATCCTC TCCACCGTGA AGATCTCCCC ATCTTATCCT 
    CGGCGATCTG CGTTTCCCTT GCTCGGAAAG GCGACCCAGA ATCAGTAACT 
    ACGCATAAGG AGAATACAAG CACCACGGCT GATCACAAAA GAAGCTGGAC 
    CACCTGCAGA TGAAGCTATA TTCAGAAGTG ATTCAGTGAA ATCCGCAGTT 
    CTAAGCTCAC CACTAGTTGA GTTTAGCACG ATTTATTCAG CAACAAATAA 
    TTTTAGCAAC AAGCTTGGTG GAGGCGGATT TGGTTTTGTT TACAAGGGGG 
    TACTACCTGA TGGCCAGGAG ATTGCTGTCA AGAGGCTGTC AAACAGATCC 
    AGTCAGGGAT TGGAAGAGTT CAAGAACGAG ATGAAAGTAA GAGGCTAATA 
    TTTGGATGGA AATTGCGATA CAAGATTATT CAGGGAATTG GGAGAGGATT 
    ATTGTACCTT CATCAGGATT CCAGGCTCAA AATTATTCAC AGGGATCTCA 
    AAGCGAGCAA TATTCTGCTT GATGATGATT TCAACCCCAA GATATCTGAC 
    TTTGGTATGG CTAGAATATT TGGTGAACAC CAACTTCAAG CCCTTACCCA 
    CCGAATTGTT GGAACCTATG GCTACATCTC TCCAGAGTAC GCAATGGAGG 
    GCAAATTCTC TGAGAAATCA GACATCTTCA GTTTCGGCGT GTTGATCCTA 
    GAGATTGTGA GCGGACGAAG GAACAGCTCA TTTGTTGATG AAGAATGGTC 
    AATGAATCTC TTGGGTTACG CGTGGACACT GTGGAAGGAA GGCAGTGTCT 
    CGGAGCTGAT CGATCCACTC ATGGGCACCA TATGCTCTTA CGATGAAGTA 
    TGCAGATGCA TCCAGGTTGG TCTTCTGTGC GTGCAGGAAT TACCAGGTGA 
    TAGGCCAAGC ATGCCCCTGG TGCTCAGGAT GCTCAGTGGG GATGTTACAC 
    TTCCTGCTCC GAAGCAAGCT GCATTTTTCG TCGGAAGGGT TCCTCTGGAT 
    GATAACAATA CTGGATCGGG GAATCAGTTG ACGTATACTC AATTGCAAGG 
    CAGATAGCTC CTTGTCAGTG CCTCTGAATC TCTTGTTCAA CTTGCCAACC 
    TGGATTACTG AAGTTGGTGT CTCTCATTTT CCCTGTTTGT TTGTTGTTAA 
    CCTAGTAATA AACCTGTTAT TATTTTTGTA TATAGGTTTG CTTGTAATAT 
    GTGGAACTGT AAGCGTATTT GGGAATTGGA ATGCCGTTTG TTTATACATC 
    TGGGTATCAG GGTATGCAAC ACCAGGAAAT TTATCCTCC

    Gene models with high sequence identity

    1. AT1G65790.1 [+] show detail - receptor kinase 1
      E-value: 3e-75; Score: 54.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR23258 1.99999636034521e-28
    HMMPanther PTHR23258:SF430 1.99999636034521e-28
    Gene3D G3DSA:3.30.200.20 1.19999985703101e-07
    superfamily Protein kinase-like domain 6.49999377884395e-11
    ProfileScan Protein kinase, catalytic domain 0
    PatternScan Protein kinase, ATP binding site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1.3e-27
    superfamily Protein kinase-like domain 6.8e-47
    Gene3D no description 4.6e-46
    HMMSmart Serine/threonine-protein kinase domain 1.4e-06
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.5e-06
    ProfileScan Protein kinase, catalytic domain 23.227
    HMMPanther SERINE/THREONINE RECEPTOR-LIKE PROTEIN KINASE 1.8e-122
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.8e-122
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT1G65790.1

    Model type
    Protein coding
    Short Description
    receptor kinase 1
    Curator Summary
    An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.
    Computational Description
    receptor kinase 1 (RK1); CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), S-locus, receptor kinase (InterPro:IPR022126); BEST Arabidopsis thaliana protein match is: receptor kinase 2 (TAIR:AT1G65800.1); Has 122289 Blast hits to 120537 proteins in 4566 species: Archae - 105; Bacteria - 13863; Metazoa - 44387; Fungi - 10421; Plants - 35006; Viruses - 434; Other Eukaryotes - 18073 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR