K13802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13802

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13802

Determination of introduced cDNA(s)

  • J023076N15 - Rice Full-length cDNAs - Original: J023076N15

    full reading [+] show sequence

    Nucleotide sequence: J023076N15 - full reading 
    GGGAAGCAGA TCATCACCTC TCCACCCGTT TCTTTCTCGG CCCATCCAAC 
    ACGCGCTCTT GCTTGAACGC GCAAAGAGAA ACACGACGGG CGAGGCGAGC 
    GAGATGAGGT TCTTCCTCAA GCTCGCTCCT CGGTGTTCCG TGCTGCTTCT 
    CCTCTTGCTG GTGACGGCGT CGCGGGGGCT TAACATCGGC GACCTGCTTG 
    GCAGCACGCC GGCGAAGGAC CAGGGATGTA GCCGGACGTG CGAATCCCAG 
    TTTTGCACAA TTGCACCTCT GCTGAGGTAC GGCAAGTACT GCGGGATCCT 
    CTACAGCGGG TGCCCCGGCG AGAGGCCATG CGACGCGCTC GACGCCTGCT 
    GCATGGTGCA CGACCACTGC GTCGACACCC ACAACGACGA CTACCTGAAC 
    ACGATGTGCA ACGAGAACCT GCTGAGCTGC ATCGACCGGG TGAGCGGGGC 
    GACGTTCCCG GGGAACAAGT GCAACGTCGG CCAGACGGCG TCCGTCATCA 
    GGGGGGTCAT CGAGACGGCC GTGTTCGCCG GCAAGATCCT CCACAAGCGC 
    GACGACGGCC AATAGCTAGC CACCACGTTT CGCACATACA CACGCTGTAC 
    AGTGAATCAG TGATAGTACA AAGAAGCCTA GAGGTAATAA AACCGCGCGG 
    CGGCGTCCAC CGGTGGCCGT GGCGTGGCGG TGCGGCAACC AGAACGCGGC 
    ATGCGCGCGC TTGCTGGCAG CTGGACCACC TGTGGTTCGT AGGCGTAGGC 
    ATTGGACCTC GGTTGTTGGT GCGGCAATGG CGTTGGCCAC TGGCGACGGG 
    GAGGAGTAAC ATTATGCTCT GTTAGTCAAT AAGACGGAAC ATGTTACAAA 
    AAAAAAAAAG AAATTATTAA ATGGAACATG GTTGGTTATT GGTAG

    Gene models with high sequence identity

    1. AT2G06925.1 [+] show detail - Phospholipase A2 family protein
      E-value: 5e-35; Score: 145.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Phospholipase A2 1.8e-19
    PatternScan Phospholipase A2, active site 0
    HMMPfam Phospholipase A2, eukaryotic 0.00019

    See the detailed result >

    AT2G06925.1

    Model type
    Protein coding
    Short Description
    Phospholipase A2 family protein
    Curator Summary
    Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine.
    Computational Description
    PLA2-ALPHA; FUNCTIONS IN: phospholipase A2 activity; INVOLVED IN: phospholipid metabolic process, lipid catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase A2 (InterPro:IPR016090), Phospholipase A2, active site (InterPro:IPR013090), Phospholipase A2, eukaryotic (InterPro:IPR001211); BEST Arabidopsis thaliana protein match is: Phospholipase A2 family protein (TAIR:AT4G29470.1); Has 123 Blast hits to 123 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR