K13803

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13803

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13803

Determination of introduced cDNA(s)

  • J013047M19 - Rice Full-length cDNAs - Original: J013047M19

    full reading [+] show sequence

    Nucleotide sequence: J013047M19 - full reading 
    GGCTCCTGGT TCCGAGCCGG CCGCCAATTC GTGGTTCCTC CTCCTCACGG 
    GCGGCGGCGA CGGCGGCGAC TACGGCGATG CGGCTGCTCT CCGGCGCCTC 
    TGCTTCCCGA ATCCCCTGCC CCCTCCTCTC ACTCGCCCGC GCGAGGGCAA 
    GATGCTTGCC GGTCCCCGCC TCTGCCACCG CGTGCCGAGC GGCCTCCTCG 
    TCAGCCGCGG CGGCCGCGGG CGACGGCGGC GCGCTGAAGC CGTGGTTGTT 
    CGTCGGGCTC GGGAACCCCG GGAAAGTGTA CCAAGGGACT CTCCACAACG 
    TTGGATTCGA GATGATTGAT GTTATAGCAG AAGCTGAAGG TATATCCCTC 
    AGCAGTATGC AGTTCAAGGC AATGGTAGGA AAAGGTCGTA TTGGAGATGC 
    CCCTATCATG CTGGCCAAGC CACAAACTTT TATGAATGCA AGTGGTGAGT 
    CTGTGGGGCA GTTGGTCTCA TATTTCAAGA TACCACTTAA TCAAGTTCTT 
    GTGATGTATG ATGATCTAGA CTTGCCCTTT GCAAAATTGC GTCTACTGCC 
    GAAAGGTGGA CATGGCGGTC ATAATGGGGT GAGAAGCATT ATCAACCATT 
    TGAAGCAGAA CCGTGATTTC CCACGTCTAA GAATTGGCAT TGGACGACCA 
    CCTGGGAAGA TGGATCCTGC CAATTTTGTT CTCCGACCAT TTAACAGAAA 
    AGAACAGGAA GAGCTTGATT TCGCTTTCCA TAGGGGCTTG GAGGCAGTTA 
    GAATAATGGC ACTTGTGGGA TTCAACAAGA GCGCAACTTA TGTGAACACC 
    GCACAGTCCT CTGAAATGTT GAATAGATGA TAAAGTGTTC AATTTATTCT 
    TATAACATAA AGATTCTTAT GTCAGATCTG AATGTTTCCT ATCCAGTAGA 
    CACTTGCACA CATGGTGGTC ATTTTACTCT CAGGAAATCC TGAGCTCCCG 
    AGGACGGAAG AGATTATTTG AGCTGCAGCA ACTTGGTACG GTGATTTTCA 
    CCAGCAGCTT AAATACAGGG AAGTTAGAGA CGTCACACTA CATGCGTACT 
    TCTGTTCCTT ACATTTGTAG CCTTGTATTG ATTTCAAAAA ACAATTGTAG 
    CACTGTAATT TGGTGACCTG GTAGGGGGAG AGAGAGAGAG AAGCCTTTTT 
    GTCTTGGTAA TCTATACTTT GGAAATCGTC AGCATACTGT TAAACAGGAT 
    TTCAGTGTTC C

    Gene models with high sequence identity

    1. AT1G18440.1 [+] show detail - Peptidyl-tRNA hydrolase family protein
      E-value: 4e-85; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Peptidyl-tRNA hydrolase 6.7e-75
    HAMAP Peptidyl-tRNA hydrolase 31.994
    superfamily Peptidyl-tRNA hydrolase 2.2e-62
    HMMTigr Peptidyl-tRNA hydrolase 3.4e-53
    Gene3D Peptidyl-tRNA hydrolase 4.6e-65
    HMMPfam Peptidyl-tRNA hydrolase 4.6e-59
    PatternScan Peptidyl-tRNA hydrolase, conserved site 0

    See the detailed result >

    AT1G18440.1

    Model type
    Protein coding
    Short Description
    Peptidyl-tRNA hydrolase family protein
    Computational Description
    Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 8043 Blast hits to 8040 proteins in 2597 species: Archae - 0; Bacteria - 5299; Metazoa - 47; Fungi - 102; Plants - 126; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR