K13803

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13803

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13803

Determination of introduced cDNA(s)

  • J013047M19 - Rice Full-length cDNAs - Original: J013047M19

    full reading [+] show sequence

    Nucleotide sequence: J013047M19 - full reading
    GGCTCCTGGT TCCGAGCCGG CCGCCAATTC GTGGTTCCTC CTCCTCACGG 
    GCGGCGGCGA CGGCGGCGAC TACGGCGATG CGGCTGCTCT CCGGCGCCTC
    TGCTTCCCGA ATCCCCTGCC CCCTCCTCTC ACTCGCCCGC GCGAGGGCAA
    GATGCTTGCC GGTCCCCGCC TCTGCCACCG CGTGCCGAGC GGCCTCCTCG
    TCAGCCGCGG CGGCCGCGGG CGACGGCGGC GCGCTGAAGC CGTGGTTGTT
    CGTCGGGCTC GGGAACCCCG GGAAAGTGTA CCAAGGGACT CTCCACAACG
    TTGGATTCGA GATGATTGAT GTTATAGCAG AAGCTGAAGG TATATCCCTC
    AGCAGTATGC AGTTCAAGGC AATGGTAGGA AAAGGTCGTA TTGGAGATGC
    CCCTATCATG CTGGCCAAGC CACAAACTTT TATGAATGCA AGTGGTGAGT
    CTGTGGGGCA GTTGGTCTCA TATTTCAAGA TACCACTTAA TCAAGTTCTT
    GTGATGTATG ATGATCTAGA CTTGCCCTTT GCAAAATTGC GTCTACTGCC
    GAAAGGTGGA CATGGCGGTC ATAATGGGGT GAGAAGCATT ATCAACCATT
    TGAAGCAGAA CCGTGATTTC CCACGTCTAA GAATTGGCAT TGGACGACCA
    CCTGGGAAGA TGGATCCTGC CAATTTTGTT CTCCGACCAT TTAACAGAAA
    AGAACAGGAA GAGCTTGATT TCGCTTTCCA TAGGGGCTTG GAGGCAGTTA
    GAATAATGGC ACTTGTGGGA TTCAACAAGA GCGCAACTTA TGTGAACACC
    GCACAGTCCT CTGAAATGTT GAATAGATGA TAAAGTGTTC AATTTATTCT
    TATAACATAA AGATTCTTAT GTCAGATCTG AATGTTTCCT ATCCAGTAGA
    CACTTGCACA CATGGTGGTC ATTTTACTCT CAGGAAATCC TGAGCTCCCG
    AGGACGGAAG AGATTATTTG AGCTGCAGCA ACTTGGTACG GTGATTTTCA
    CCAGCAGCTT AAATACAGGG AAGTTAGAGA CGTCACACTA CATGCGTACT
    TCTGTTCCTT ACATTTGTAG CCTTGTATTG ATTTCAAAAA ACAATTGTAG
    CACTGTAATT TGGTGACCTG GTAGGGGGAG AGAGAGAGAG AAGCCTTTTT
    GTCTTGGTAA TCTATACTTT GGAAATCGTC AGCATACTGT TAAACAGGAT
    TTCAGTGTTC C

    Gene models with high sequence identity

    1. AT1G18440.1 [+] show detail - Peptidyl-tRNA hydrolase family protein
      E-value: 4e-85; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Peptidyl-tRNA hydrolase 6.7e-75
    HAMAP Peptidyl-tRNA hydrolase 31.994
    superfamily Peptidyl-tRNA hydrolase 2.2e-62
    HMMTigr Peptidyl-tRNA hydrolase 3.4e-53
    Gene3D Peptidyl-tRNA hydrolase 4.6e-65
    HMMPfam Peptidyl-tRNA hydrolase 4.6e-59
    PatternScan Peptidyl-tRNA hydrolase, conserved site 0

    See the detailed result >

    AT1G18440.1

    Model type
    Protein coding
    Short Description
    Peptidyl-tRNA hydrolase family protein
    Computational Description
    Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 8043 Blast hits to 8040 proteins in 2597 species: Archae - 0; Bacteria - 5299; Metazoa - 47; Fungi - 102; Plants - 126; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR