K13811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13811

Determination of introduced cDNA(s)

  • J023024E20 - Rice Full-length cDNAs - Original: J023024E20

    full reading [+] show sequence

    Nucleotide sequence: J023024E20 - full reading 
    GTATCGTCGG CATTTCCTCC AGGATACCTG ATGGGAAGGA GATTATGCAA 
    TGCAGTGGTA TCGTGGTCGA TTGGAACAAG ACCAGCAGGT TGGCAACAAT 
    CGTAACTTGC TCTGCAGCCG TGTGCTTTGA TGGTGCACTA GTCCATCCCA 
    ACCCCAAGTT GCTCGTACAT TTGCCTAATA GGTCTACCGC AGAAGGACAA 
    TTGCTTTTCT TCAATGCACA CTACCGTATT GCATTGTTGG AGGCCTTGGT 
    GGACTTTCCA TTGGAGCCTG CTAATTTTGG CTCTAGTCCA AAATTTGGAC 
    AAAAGGTGTT TACCTTGGCA AGGGACAAGA AGTCATCCTT CTTTGCTAGG 
    TCTGGGACAG TCCTGTTGCA GGATCCACCA TTTTTTTTGA AGTACAAATA 
    CTGGTTATCT CTCAGCTCTG CAATTGAACT GTGTGGCACT GGAGGACCTG 
    CGATTGATGA GCGTGGCGAT GTTGCAGGGA TGACATTCGG TCGTTTGCCA 
    AATCCGGATG TCCTCTCTAT CTCTATCCTG CAGACATGCA TTGACATGTG 
    GAGGAGATTC AGTCGTGTTG CTCGCCCCTT TCTTGATATG GACTTGATAG 
    CCTTTGAGAC GTTGGATATT ACACACCAGG AGGAGATTGA ATCGGAACAT 
    GGCATTACCG ATGGTTTCAT CGTGGACTTG GTGTGCGATG ATTCCACTGC 
    TGGGAGACTT GGTATTTCCA GGGGTGATGT CATTGTTTCA TACAATGGAC 
    TTCGTGACTT CACTCTGCAT ACGTTTGAGG AGTACCTTCT CAATCTTGGC 
    TGGGGTTTTC TTGAGAGTAC AGATCCGAGC TGGACGATCA ATTTAGAGCT 
    TGAGATATAT GATCCTGTTA GAGGTACTAT CAGAGGTGTT ACCTTCCCTC 
    TGGGATTTTC TGATATTTGC GAGGATGTCC TTGTACTGCC ATGAGACAGC 
    TGCGGCATAA ATCGTCAAAG CAATGTGGCT AACTGTCGCT ATGCCATATG 
    CCTTTTTTTG TGGCAATTGT TTTGTGATGT CATATATTAT CTTTTTTTTT 
    TCTGGTGAGA TCTGTAACCA GAAGAACATA TTGTGATATT GATCCTTTTT 
    TTGTTATGCG GTAGGGCTGT TTGTGACTTG CAAGGTTTCT GGTGGCCACG 
    ATTACAAAAC TGAAAAAAGA TGAAACATAT CCG

    Gene models with high sequence identity

    1. AT5G27660.1 [+] show detail - Trypsin family protein with PDZ domain
      E-value: 1e-08; Score: 57.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Serine/cysteine peptidase, trypsin-like 1.7e-15
    HMMPanther PERIPLASMIC SERINE PROTEASE 0.00068
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 0.00068

    See the detailed result >

    AT5G27660.1

    Model type
    Protein coding
    Short Description
    Trypsin family protein with PDZ domain
    Computational Description
    Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR