K13812

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13812

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13812

Determination of introduced cDNA(s)

  • J033096D06 - Rice Full-length cDNAs - Original: J033096D06

    full reading [+] show sequence

    Nucleotide sequence: J033096D06 - full reading 
    ACCATACTAG AGAAAGCCAT AGAAAGGAGA TAAGAAGAAA CCAAGAAAAG 
    GGAGAAACAA AAGTTGAAGA AGACTTTCTG CTGATATTTT TGCACATATA 
    TATAATTTTT TCTCCTCCAT CTGCACTCTC TGGAAAGAAG AAGAAGAAGA 
    AGCAGAAGAA GCTTGGAGCT TGAGCTTTCT GAATTTGTCT TGTCTTGCAA 
    ACTAGGATAA AGATACAAGT TAGTAGTACA AGAAACAGTA AAGCAGTCGG 
    TGTAACTAAT GGGGGAGATG AACCAGCCGC CGCCGCCGCC GGTGGCCGTG 
    CCGCCGCCGA TGGTGATGCA GCCAATCATG CATCCGCCCG TCGGCACCGG 
    CGCCGTCTTC CCGCCGCACG AGCAGTTCCA CCATCTCGCC TACTGCGTCC 
    ACTCCAACCC TTCCTGGGTT CAGGTGGCCG CACTTGCATT CCTCCACTAT 
    CTTGTGATGC TGGGTTCTAC TGTCATGCTT GCATCAACTA TTGTTCCTGC 
    AATGGGTGGT ACCCCAGGGG ATAAGGCTCG TGTTATTCAA TCCTTCCTAT 
    TTATGAGTGG CATCAATACT CTCCTCCAAA CACTTGTTGG AACGCGGCTC 
    CCTACAGTTA TGAATGCTTC CTTTGCATTT GTCGTCCCAG TACTGTCAAT 
    AGCCAAAGAC TTTGAACAAA ATAACTATGC GAGCAGTCAC CAGAGATTTA 
    CTCACACAAT GAGAGCAACT CAAGGGGCTC TGATTGTTGC TTCTATCCTC 
    AACATGATTC TTGGGTTCAG CACAATTTGG GGGGCATTCG CCAGGAAATT 
    TAGTCCTGTA ATAATGACCC CTGTTGTTTG CGTTGTTGGT CTTGGGCTAT 
    TTGCACTTGG CTTTCCCCAG GTTGGAAAGT GTGTGGAGAT CGGGCTACCA 
    ATGCTAATCC TTGCAGTTGT TGTGCAACAG TATGTGCCAT ATTACTTCCA 
    TCATTACCAT GAGCGAATCA CCTTCTTGTT TGAGAGGTAT TCGTTGCTTC 
    TTTGTATTGG GATTGTGTGG GCCTTTGCAG CTATCCTTAC TGCTGCTGGT 
    GCATACAACC ATGTTTCACT CAAGACCCAG CAGCACTGCC GCACTGACAA 
    GTCCTATCTC ATATCATCGG CACCATGGAT CAAAATCCCA TACCCCTTCC 
    AATGGGGTAC ACCAATCTTC ACTGCAGGTC ATTCATTTGG AATGATGGGT 
    GCTGTACTTG TTTCTGCTTT TGAGTCCACT GGTGCACACT TTGCAACTGC 
    ACGTCTAGCT GGTGCGACAC CACCTCCAGC TAGTGTCCTT AGTAGGAGTG 
    TTGGTTTGCA GGGCATTGGA ATGTTCCT

    Gene models with high sequence identity

    1. AT2G26510.2 [+] show detail - Xanthine/uracil permease family protein
      E-value: 2e-122; Score: 436.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SODIUM-DEPENDENT VITAMIN C TRANSPORTER 3.9e-135
    HMMPanther Xanthine/uracil/vitamin C permease 3.9e-135
    HMMPfam Xanthine/uracil/vitamin C permease 1e-36

    See the detailed result >

    AT2G26510.2

    Model type
    Protein coding
    Short Description
    Xanthine/uracil permease family protein
    Curator Summary
    permease
    Computational Description
    pigment defective embryo 135 (PDE135); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT2G05760.1).
    Link
    InterPro Scan - TAIR