K13813

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13813

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13813

Determination of introduced cDNA(s)

  • J033098B02 - Rice Full-length cDNAs - Original: J033098B02

    full reading [+] show sequence

    Nucleotide sequence: J033098B02 - full reading 
    GACACCCATC CTCCCCACCC CCCAAGCGGC GGCGAGACCA AATCCCCCAC 
    TTCTCTCTCA ATCTCTCTCT CTGCTAGGGT TTATCCCTCC GCGCCGCCGC 
    CCCCGGAAGA CGAGAGAGCG CCATGGCCGG CGGTCCCGCG GCGGTGTCGT 
    TCCTGACCAA CATCGCCAAG GCGGCGGCGG GGCTCGGCGC CGCGGCCTCC 
    CTCCTGTCGG CGTCGCTCTA CACCGTCGAC GGCGGCGAGC GCGCCGTCAT 
    CTTCGACCGG TTCCGCGGGG TGCTCCCGGA GACCGTCGGC GAGGGGACCC 
    ACTTCCTCGT GCCGTGGCTC CAGAAGCCCT TCGTCTTCGA CATCCGCACG 
    CGCCCCCACA ACTTCTCCTC CAACTCCGGC ACCAAGGACC TGCAGATGGT 
    CAACCTCACC CTCCGCCTCC TCTCCCGCCC CGACGTCGTG CACCTCCCCA 
    CCATCTTCAC CTCCCTCGGC CTCGAGTACG ACGACAAGGT GCTCCCCTCC 
    ATCGGCAACG AGGTGCTCAA GGCCGTCGTC GCGCAGTTCA ACGCCGACCA 
    GCTCCTCACC GAGCGGCCCC ACGTCTCAGC CCTCGTCCGC GACGCCCTCA 
    TCCGCCGCGC CCGCGAGTTC AACATCATCC TCGACGACGT CGCCATCACC 
    CACCTCTCCT ACGGCATCGA GTTCTCGCAG GCCGTCGAGA AGAAGCAGGT 
    GGCGCAGCAG GAGGCCGAGC GCTCCAAGTT CCTCGTGGCC AAGGCTGAGC 
    AGGAGAGGCG CGCGGCCATC GTGCGCGCGG AGGGAGAGAG TGAGTCCGCG 
    CGGCTCATTT CTGAGGCCAC CGCCGCCGCT GGGACAGGGC TGATTGAGCT 
    GAGGAGGATC GAGGCGGCCA GGGAGATTGC TGCCGAGCTG GCCCGTTCTC 
    CTAATGTTGC ATACGTTCCT GCTGGGGACA ATGGCCGGAT GCTGCTCGGC 
    CTCAACGCTG CCGGGTTCGG CCGGTGATCC GTCACTCCAA TTTTACCCCT 
    TTAGTTGCCC AGGCATCCGC TCTGTGTTAC ATTAAACTGG AATGATGGTA 
    TGGGGAATTA TGTTATCTGC TACTTTTGGT AATATTTAGT CTGGATGTCT 
    TTGAACGGAA TGTGCTAATC TTTGTGATCC AAATAAGTTC TGGGTCTAAG 
    ACTCATTTAT GTTC

    Gene models with high sequence identity

    1. AT5G40770.1 [+] show detail - prohibitin 3
      E-value: 2e-100; Score: 363.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Band 7 protein 7.1e-23
    HMMPanther Prohibitin 4.8e-169
    Coil coiled-coil 0
    HMMSmart Band 7 protein 3.8e-41
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68

    See the detailed result >

    AT5G40770.1

    Model type
    Protein coding
    Short Description
    prohibitin 3
    Curator Summary
    prohibitin 3
    Computational Description
    prohibitin 3 (PHB3); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 4 (TAIR:AT3G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR