K13822

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13822

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13822

Determination of introduced cDNA(s)

  • J023061B19 - Rice Full-length cDNAs - Original: J023061B19

    full reading [+] show sequence

    Nucleotide sequence: J023061B19 - full reading 
    CCCCCCCTCG CCCTCGCCCC AATGGCCGTG CATTCCTCGG CCGCCTCCGA 
    CCTCTTGCCG GGATCCCCGG GTGGATGGTA GCAGGGGTGG AGGTAGGAGG 
    AAGGGCGCGC GCTCCTGGCT GTCTGGCTGC GGTGCGGGCA GGGGCATCGG 
    TAGCTGCGGT GCTGCTCCCT TGGGGGGTGG GTTTGGGTGG TTTTTGGATC 
    GTGGGGGAGA GGAGCCGAGA TTCTTTGTGA TGCACTGGGC TCGTGTTCAT 
    ACTTCAAACT GACAAACAAA AAAGGTTCTT TAACCGGCTT CAGCGATTAA 
    TGGCCTTCAC TGGGGAGGAA AAAATGAAGG GTTGTCGCCC AAAACTTTTC 
    GGAGCAAAGG AGAATAAAGT CTCAAACAGA ACAGACAAAC CAAGTTGCAA 
    CACCGGGAAG TTTGGTCCAA GTTCTTCTAA TGCTGCGTCA TCTTCCCCCC 
    TAAGGGCATT TTCAGTTAAG GGCATGCGTC TCAGTCATTT CCTGGCGCAA 
    ACTCCTAATA ATACAACAAC TGAGCCCGTC AGAATATTTG TTGCCACCTG 
    GAACGTTGGA GGAAAAGCAC CTACAGCTGA GCTGAACCTG GATGATTTTC 
    TTCCCCCTGA TGATCATTCA GATATTTATG TTTTGGGGTG GGTCTTTTAT 
    TGCCCTTTTC TTAATATACT AGACGTGGAA AATATTTTTT TTGTCAATTT 
    TACTAAATTT TCTGTTCATG TTATCCGACT TTCTCCATGT ATGTTAATTT 
    CTTGAATGTT GGCTTTGACA TATAAGACTA TACTAGTATT TGATACATAG 
    CTGAACGAGG TAAAGAAAGG AAGTTCCATG

    Gene models with high sequence identity

    1. AT5G65090.1 [+] show detail - DNAse I-like superfamily protein
      E-value: 0.000000005; Score: 58.50

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.0002
    superfamily Endonuclease/exonuclease/phosphatase 0.00000012

    See the detailed result >

    AT5G65090.1

    Model type
    Protein coding
    Short Description
    DNAse I-like superfamily protein
    Curator Summary
    Encodes a protein involved in root hair morphogenesis and tip growth. Required for restricting both the size of the root-hair initiation site and the width of the root hairs during the transition to tip growth, but, apparently, is not required for normal subsequent tip growth.
    Computational Description
    BRISTLED 1 (BST1); FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: root epidermal cell differentiation, root hair cell differentiation, cell tip growth; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT5G04980.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR