K13842

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short) low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13842

Determination of introduced cDNA(s)

J023126C15 - Rice Full-length cDNAs - Original: J023126C15

full reading [+] show sequence

GGCACACTCC ACACTGCCGA GCAAAATCGC TAAACCCAGC CTCGCCGTCG 
CCGGCGACAT GCTCCGCCTC TCATGCTGCC GGCCGACGGC CGGCGGCGGC 
CTCGCCGGCG CCATGCTCCA CCTCCTCCCG CTGCTCCGCG CCCGCGCCGC 
CACCCATCTC CCCACCTCCT CTCTGGACCT CAGCCGCCGC CGCCGCCTCC 
TCCTCTCCAC CGCCGCCAGA TCCGCCGCCG CGACCCCCTT CTCTGTCGAG 
GAGTACCTCG TCGACACCTG CGGCCTCACC GGCGCCCAGG CGCTCAAAGC 
ATCCAAGAAG CTCTCCCACC TCAGGTCGCC CGCCAAGCCC GACGCCGTGC 
TCGCCGTCCT CTCCGGCGTC GGCCTCTCCC GCGCCGACCT CGCCGCCGTC 
GTCGCCTCCG ACCCGCAGCT GCTCTGCGCC AGGGCCGACA ACATCGCCCG 
CCGCATCGCC TCCCTGCGCG ACCGCGTGGG CTTGTCGGAC CCCCAGATCG 
GCAGCTTCCT CCTCGCGGGC GGCGCCAAGG GCATCCACGC GTGTGACGTC 
GCCTCGAGGC TGGAGTTCTG GATCCCCTTC TTGGGATCCT TCGAGACGCT 
CCTCAGGATC TTGAAGGGGA ACAACGTGCT GGTGCTCTCT GACCTTGAGA 
AGGTGATCAA GCCCAACATC GCGCTGCTCC AGGAGTGCGG GCTAACTGTT 
TGTGATATTG CCAAGATGGC CAGGTTTGCT CCACGGATGT TCACGTCCAA 
TCCAAAGCAG GTGGAAGGGT TTGTGCGGCG TGCCGATGAG CTTGGCGTGC 
CACGCACCTC AGGCCAATTC AAGTACATGG TGGGTATTTT TGCTAACATC 
AGCGAAGGCA GTGCCACCGC GAGGATGGAG TACTTGAGTC GCAGTCTTGG 
TTGCTCCATG GACAAGCTCC GCTCTGCGGT CCAAAAGTTA CCACAAATTC 
TAGGATTATC TGAGACAAAT CTTGGCAGCA AGATAGAGTT CTTGGTCGGC 
AAGGTCAGAT TGGAGCCTGA ATACCTTTTG AAGACGCCAA AGCTGTTCAC 
GTACAGCTTG GAGAAGCGGT TGGTGGCGAG GCATTATATT GTGCAAGTCC 
TTGCTGCGAA GGGATTGAAG GGATTGAAAA AAGATGTTCC CTTTTGCTCA 
TATGTACAGC TAGGCGAAAG TTGTTTTGTA AAAAACTTCA TTGATCAGCA 
CGAGAACGTT GTCCCTGGTC TTTCTGATGC CTATGCTGCA CTTCGTGCTG 
GGAAAGTGCC TCCAGAGGTC CAACACTGAC ATCTTCGGAC AGAGTTATTG 
GAATTCATTC TGGCAGAATG CCTTCTGGAG TCCAACTATA ACATCTTTGG 
AGGTTAATTA TCTTTCAAGC CCATACCTCA TGTTGTGAGG ATCACTAATT 
GGTGTGATGG TTTTCATGCA TGGTCATGCC TTTTTCATAT TTTGATTTCA 
GTTGTAATAT GAGTTGTTGC TAACTTGCTA TTTATGCAGC AACTTGATAG 
TTTAAATCTT GATGCTCTAG TGCCCTTACA GCCTT

Gene models with high sequence identity

AT5G07900.1 [+] show detail - Mitochondrial transcription termination factor family protein
E-value: 9e-20; Score: 95.50

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Mitochodrial transcription termination factor-related	2e-24
HMMSmart	Mitochodrial transcription termination factor-related	46
HMMSmart	Mitochodrial transcription termination factor-related	1.1
HMMSmart	Mitochodrial transcription termination factor-related	0.047
HMMSmart	Mitochodrial transcription termination factor-related	66

See the detailed result >

AT5G07900.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G21150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR