K13846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13846

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13846

Determination of introduced cDNA(s)

  • J023104M24 - Rice Full-length cDNAs - Original: J023104M24

    full reading [+] show sequence

    Nucleotide sequence: J023104M24 - full reading 
    GACGCACGTC AGAGCTCGCC TCGCCGCCGC CTGACCTCGC CTCGCCGTCG 
    CGCCGCCGCC CACAGACACA GATCGATTCC CTCCGGCTCC GATATGGAAG 
    ACGCTGCCGC CCGCCGCGAG CGCTTGCGTG CCCTTCGCGC TGCCAAGGAC 
    CTCCTCTCCA CCCCCGACCC CGCCGCCGCC GGACAAGGAC AACACCACCA 
    AAATGGGAAC CGTGAGACAG CACCAGAACA AGCGGAGCAT CCAACTTTAC 
    CAGCTCCTCT GGACGCACCT GAGGAGGCCT CAAAGGAGAA CATTAACCCC 
    ACTGACGAAT CTGAGGAGGT TCAAAATGAT GGTGATATGC CAGCCATGAA 
    GTTCAGAAAC TACCTTCCTC ATGATGAGCA ACTTCGGGGT GGTAAGGTGG 
    CTCCAGTGTC CCTCCCAAAG TTTGAGGATC CAATTTCTGC TGAAACTACA 
    GAGCCAAAGC AAGTTGAGAA CCCCTTTGGA AACATAGCTC CAAAGAATCC 
    AAATTGGGAT CTGAAAAGAG ATGTGCAGAA GAGGATGGAC AAACTTGAGA 
    AGCGCACGCA GAAAGCACTG GCTGAGATTG CATTGGAACA ACAAAAGGAG 
    AAAGAAGCAC TTGGGGAAGG AAGCGATGCA GCCCAAGATT GAGGGAGGGC 
    TCAGGGGAGA TGGATATGAA GTAGCTGAAC CTTTGATATG TTAAGAATGC 
    TCAAGGGGTG CACTGTGAAC TGATGAAAAG CTAATGGTAA CATTCGGGGT 
    CTAGCAATTA GTGTGCGACT ATACGTTTGT AAGCATGGAA AACCTTAATA 
    AACCTGATTC AGGTTGCTAG ACCCGTGTGC TCACTGCTTG ATTAAGTGTA 
    GTTAGGGGAC TCGCATTGTA CTACCCCCAC CAAAATGTAT GTTTGTGTTG 
    TGCTTAATTC TCTTGTAAGT CAACTGTGCT TAGATTCTGA TGCTGCCTGC 
    CATGGAAACC AGTTAAACGT ATTAATTTAA CATATGCTTT AATTTCCT

    Gene models with high sequence identity

    1. AT3G05070.1 [+] show detail - CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits ...
      E-value: 8e-29; Score: 124.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam mRNA splicing factor, Cwf18 2.5e-26

    See the detailed result >

    AT3G05070.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR