K13903

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13903

Determination of introduced cDNA(s)

  • J013002P22 - Rice Full-length cDNAs - Original: J013002P22

    full reading [+] show sequence

    Nucleotide sequence: J013002P22 - full reading
    GGTAGTCATC TCTCGCTCGC ACACAACTAA TAACCAACGA AACCACGAGC 
    AGCGGCTGAT CGGTAAGCGG TAGTGGTAGT AGTAGTTTCG TTTGTACGTT
    GACCCAAGCA GCAGATGCCA ATTGCAGCAG CCGCGGTCAC CTCGCCACCG
    GCCGCCGCGC AGGTGCACGG TGTCGTGCCA AGGCATGCCT CGCCGACGCC
    ACAGCAGCGG GCGGCGCCGC GGCGGGAGCA GTCGCCGCTG AACCCGAGCT
    CGCAGTCGAT CCGGTCGGCC TCCTCCGGCA CCGAGCTCGC AGGTTCCGCG
    GCGACGGAGA CCTCCCGGGC GCACATCGCC AACCTTGACC GGGTTCTCGG
    GAAGCCACCG CAGGTGCCGA GGCCGGCGAG CCACGCGGCG GCGAGCAAGC
    AGGAGCGGCA GCAGCAGGAC GGGGAGCTGG AGCCGCTCAA CGTCAGGCAC
    GGCCTGCTCA ACGCGCTCAA CCTGTCCTTC TTCGTGCCCA TGCCCGGGAT
    GCGGGCCCGC ACCGCCGCCG ACGAGCACAT GTCGCCTCGC AGCCTCATGC
    ACATGCAGCA GCTCCTCTCC GCCGACTCCC CGCGCGCCTC GCCGAGGAGC
    ACCATCGCGC CGCGCTGGCG CAGCCTCCAC GGGGAAGACG GCTGGGCCGG
    CCTCCTCGAC CCGCTCGACT CCGACCTCCG CCGCGAGCTC CTCCGCTACG
    GCGACTTCGT CCAGGCGGCG TACCAGGCGT TCCACTCGCT GCCCACCGCG
    TCGGCGAGGC ACCGCGGGCT CATGCTCCCC GACCGCTCCT ACCGCCCGAC
    GCGGAGCCTC TTCGCCACCT CGGCGCTGTC CATGCCGCCG TGGGCGAAGC
    GCCCCAACAC CCCCGAGTGG CTCACGCAGC AGTCCAACTG GATCGGATAC
    GTCGCCGTGT GCGAGTCCGA GCGGGAGGTC GCCCGCATGG GCCGCCGCGA
    CATCGCCATC GTGCTGCGCG GGACGGCCAC CTGCCTCGAG TGGGCGGAGA
    ACCTGCGCGC CTCGCTCGTG CCTCTCGACG GCGAGAGCGG CGAAGGCGGC
    GGGCAGGAGG AGCCCAAGGT GGCACGGGGA TTCCGGAGCC TGTACAAGAC
    GGCAGGGGAG AAGGTGAAGA GCCTCTCGGA GGAGGTCATG GGCGAGGTGC
    GGCGGCTCAT GGAGAAGTAC AAGGGCGAGG AGCTCAGCAT CACGGTCGTC
    GGCCACAGCC TCGGCGGCGC CCTGGCGCTC CTCGTGGCCG ACGAGATCGC
    CACCACCGTC CCCGACGCGC CGCCCGTCGC CGTGGTCTCC TTCGGCGGGC
    CCAAGGTCGG GAACGCCGCG TTCGTGGACA AGCTCCAGAA GAACGGCAGG
    GTGAACGTCC TGCGCATCGT CAACGCCGGC GACATGGTCA CCAAGGTGCC
    CGGCGTGGCG CCGCGCCTGC CGCTCACCAA GGAGCAGTAC CAGCACGTCG
    GCGCGGAGCT GCGCATCGAC AGCAAGAACT CGCCGTGCCT CCGCCCCGAC
    GCCGGCCCGG CGTGCCGCCA CGACCTGGAG GCGTACCTGC ACCTCATCGA
    CGGGTTCACG GGGACGGGCC GCCCGTTCCG GCACGACGCG CGCCGCAGCG
    TGATCCGGCT GCTGCAGTTG CAGAGGGGGA ACGTGAAGAA GGAGTACGTG
    AACCGCGCCC GGGAGCTCGG CGTCGACCCC TCGGCGCCGG TGGACGTCGG
    CCGGAGCATG GCGTACGGGA ACTGCGCCGT CGCGAGCCCC TCCTCGTGAG
    ACGACGAGAT TGACGTCTTC TTCCAAGAGC CCTTAATTAT GTAAATTTTT
    GTAGAAGCAG ACCAACAATT CTTTCGTTAG TCAGGGGTGT CAGCGGGAAA
    AAAGATTTTC CCTTGTCATT TGACGTATGT ATGTACAGTA CATAAAAACT
    ATTATACTTG CAAAAAAAAG GAAAAACATT ATGT

    Gene models with high sequence identity

    1. AT4G16820.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 5e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Lipase, class 3 4.8e-36
    Gene3D no description 2.8e-37
    superfamily alpha/beta-Hydrolases 1.7e-51

    See the detailed result >

    AT4G16820.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Curator Summary
    Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G44810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR