K13905

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13905

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13905

Determination of introduced cDNA(s)

  • J013110L09 - Rice Full-length cDNAs - Original: J013110L09

    full reading [+] show sequence

    Nucleotide sequence: J013110L09 - full reading 
    TGGGGTTTTA TCACCAAACG CCGGTCCGGA TAACGTCCTC CTCCTCCCCT 
    CGCCTCGCCA CCTCGCTCAC TACCTACCTC TCCACCAATG GCGACCACCA 
    CCACCACCAC CATCTCCTCC TCCCTCATAA CCCCTCCGGC CGCGGCCCTC 
    CACCACCGCA GCAGCTCCTG CCGGTGCCCC TCCCGCCTCA CCGTCGGGGC 
    CGCGCGGTGG TGGGCGAGGC GCCGGCAGCC GGCGGTGGTG GTGCGGGTGG 
    TCGCCTCCTC GTCGGTGCTC GAGGCGCCCG AGGAGGTGGC GGCGCGGAAG 
    CTCTACGTCG GGAACATCCC CAGGACCGTC ACCAACGACG AGCTCGCCGC 
    CATGTTCGCC GACCACGGCA CCGTCGAGCG CGCCGAGGTT ATGTTTGACA 
    AATACACTGG CCGGAGTAGG CGCTTCGGGT TTGTCACGAT GAGCACACCG 
    GAGGAGGCTA ATGCTGCAAT TGAGAGCCTG AATGAAACTG AGGTCGGTGG 
    TAGAAAAATT AAGGTTAATG TGACGGAGAG CTTCTTGCCT AACATTGATC 
    GGTCTGCACC AGAACCAGAG CCTGTATTTG TGGACAGTCA GTACAAGGTT 
    TACGTTGGTA ATCTTGCAAA GAGCGTGACC ACAGAGATGC TTAAAAACTT 
    CTTCTCTGAA AAGGGAGAGG TTCTCAGTGC CACCGTGTCC CGGATTCCAG 
    GAACTGCAAA GTCCAAGGGA TATGGTTTTG TCACCTTTTC TTCAGAGGAA 
    GAAGTTCAGG CTGCAGTTTC TACTTTCAAC AATGCGGAAT TGGAAGGACA 
    ACCCATCCGT GTGAATAAAG CATAGGCATC TAGCAGATAT TTCCAGACTG 
    GTTGATGGCA AAGTGGGTAC CTCTGAGGCT GAAGTAACTT TGTGAACACC 
    TGTAGACTGA GGGAAACTTT AAGGCTAGAT ATTTGCAACA AAGTGGAAAG 
    ACCTTCCAAT GCAATTTCAC TTTGCAACTA AACAAATTTT GTACGATAAC 
    AGCATATGTG AAGAAATTTT ATTGGTGTTC

    Gene models with high sequence identity

    1. AT3G52150.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 4e-59; Score: 225.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNA-binding domain, RBD 9.7e-26
    superfamily RNA-binding domain, RBD 1.2e-22
    HMMPfam RNA recognition motif, RNP-1 6.2e-22
    HMMPfam RNA recognition motif, RNP-1 2.4e-19
    HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 1.3e-71
    HMMPanther RNA-BINDING PROTEIN 1.3e-71
    Gene3D Nucleotide-binding, alpha-beta plait 1.2e-25
    Gene3D Nucleotide-binding, alpha-beta plait 6e-24
    HMMSmart RNA recognition motif, RNP-1 1.2e-28
    HMMSmart RNA recognition motif, RNP-1 1.1e-24
    ProfileScan RNA recognition motif, RNP-1 19.485
    ProfileScan RNA recognition motif, RNP-1 18.769

    See the detailed result >

    AT3G52150.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 33 (TAIR:AT3G52380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR