K13909

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13909

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13909

Determination of introduced cDNA(s)

  • J033065J10 - Rice Full-length cDNAs - Original: J033065J10

    full reading [+] show sequence

    Nucleotide sequence: J033065J10 - full reading 
    GGGAGCCGCC ACTTCCTTCC TTCCAAAAAG GAAGAGGGGA AAAAAAATCT 
    ATAGCCACCA AATTGAGCAA GATTCTCACA CGAAACCAAT CACAAGCTAG 
    CATTCGTTTA ATTTCTTGGC TGCTATTGTC CGGGGAAGAG GTTCTTGGTG 
    TCCAAAGAAT TTGTCGGTTC TAGGGAGCTC CAAGTTGCTG TAGCTTCATT 
    TCTTGGTTCT TTGGGTTCTT GGATTGGCGG TACTGATTGT GGGAGATGTT 
    GTCTGTGAGC TGCCCGAGAG TGTACATGAG CAGGAAGGCG CTGGATTTCG 
    GTCAGCTGGC CTCCTGCCGG TGCCGTTGGG CTGGCCGGTC CGGCATGCGG 
    GTGGCGCCGA GGCGGCGCAT GCCATGTGTT TGTTTCGTGG CCTCACCGAG 
    CCAGCCAGGC CTTGCTGCAG TTGATGTGCC AGCAGAGGCG ATTTCTAGTG 
    CGAGAACAAC AACAATGATC CCTGAGCGAA TTTCTGTTTC TTCACTTTTG 
    GAGGTTGTCT CCGACGACCT GCTGAAACTC AACAATAATC TGAAATCGCT 
    TGTTGGTGCA GAAAATCCAG TTTTAGTTTC TGCGGCAGAA CAAATTTTCG 
    GTGCTGGTGG AAAAAGGTTA AGACCAGCAT TAGTTTTTCT GGTGTCCAGA 
    GCAACTGCTG AATTAGCTGG TTTGTTGGAG CTTACTACAG AGCATCAACG 
    CCTGGCAGAG ATCATAGAGA TGATTCACAC AGCAAGTTTA ATACGTGATG 
    ATGTCATAGA TGATAGTGGC ATGAGGAGAG GGAAAGAAAC TATTCATCAG 
    CTATATGGAA CACGGGTGGC CGTACTTGCT GGTGATTTTA TGTTTGCACA 
    ATCTTCTTGG TTCCTAGCGA ACTTAGAAAA CATCGAAGTT ATTAAGCTCA 
    TCAGCCAGGT GATCAAGGAC TTTGCCAGTG GTGAGATAAA ACAAGCATCT 
    ACTCTTTTTG ACTGCGACGT CACCCTTGAT GATTACTTGC TCAAGAGCTA 
    TTATAAAACC GCTTCGTTGC TCGCCTCAAG CACAAGATCT GCTGCAATAT 
    TCAGTGGTGT AAGCACCACT ATATGCGAAC AAATGTATGA ATACGGCAGG 
    AATCTCGGGC TCTCGTTCCA GGTAGTAGAT GACATTCTTG ACTTTACCCA 
    ATCAGCTGAG CAACTTGGGA AACCAGCAGG GAGTGACTTA GC

    Gene models with high sequence identity

    1. AT1G78510.2 [+] show detail - solanesyl diphosphate synthase 1
      E-value: 2e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Polyprenyl synthetase 4.8e-59
    PatternScan Polyprenyl synthetase 0
    PatternScan Polyprenyl synthetase 0
    Gene3D Terpenoid synthase 5e-64
    HMMTigr Solanesyl diphosphate synthase 1.8e-135
    HMMPanther Solanesyl diphosphate synthase 1.4e-154
    HMMPanther Polyprenyl synthetase-related 1.4e-154
    superfamily Terpenoid synthase 3.4e-71

    See the detailed result >

    AT1G78510.2

    Model type
    Protein coding
    Short Description
    solanesyl diphosphate synthase 1
    Curator Summary
    Encodes a protein with solanesyl diphosphate synthase activity.
    Computational Description
    solanesyl diphosphate synthase 1 (SPS1); CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase-related (InterPro:IPR017446), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 16694 Blast hits to 16671 proteins in 2946 species: Archae - 341; Bacteria - 9481; Metazoa - 459; Fungi - 560; Plants - 421; Viruses - 0; Other Eukaryotes - 5432 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR