K13912

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13912

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13912

Determination of introduced cDNA(s)

  • J023007A04 - Rice Full-length cDNAs - Original: J023007A04

    full reading [+] show sequence

    Nucleotide sequence: J023007A04 - full reading 
    GATGGATTCC CATGGCCACC ACAGTGAAGT CTCGGCCGCC GCCACCGCCA 
    CCGCCGCCGC CGCCGCATGC CCTCCCCGCC GTGACCACCC GCCGCCGCGG 
    CTCCTCCTCC TCTTCGCCGG CGGCGGCGAA GGCTTCGGTG TTCTTGTCCG 
    CTCCTCGGGA GTTGCTGCTT GTTCTTTGCA GCCTCTTGGT GGTTGCTGTG 
    CTGTTCGTCT CGTCGTCGGC GGCGGCGGCG GCGGAGGATG GTGCGGAGGG 
    GAGTGATGGC GACCTCGGCG GCTGCCTCGG TTTCCGGGAT GGCTGCGCGG 
    ACCGGAGCGC CCTGTGCTTC TCGCCCTCGG CAGTTGAGTC CATGCTTGCA 
    AGCGAGGATG ATGGAGTCAA GGAGATGGAT TTGGTGGTGT CGAGAGACTG 
    GGGACCACCA CCACCACCGT CGTTGGGCTT CCGGTTGCCC GGCCACCGCG 
    GCGTGGTGAC GTGCTCGTCG GCGGCGGACG CGCTGATCAC CTCCCGGAAT 
    GGGGTGGGAC GGGAGGATGG TGGTGAGAGG TGGTATAATG TGGCGTCGTG 
    CCAGGCGCCC CTTGTGCCTG ACAATTGGAT GCGGGCGATG GCCGGCGCGA 
    CGCCGGAGCT GGATGCCGCG GATGCCAGCA CCGATGGCAT TTTCGGTTCG 
    TCGTCGTTGG ATGTTGAGAT TAGCCCGCCG GTGTTGGATT GGGGGAAGAG 
    TAGCTTGTAT GTGGCTTCCA TGGCCACCCT GACCGTGGTG AATTTGAACA 
    ATGACAGTGC CTTGCGCGTG TACGAGCCGT TCAGTACCGA CCCGCAGTTT 
    TATGTGTATG GTTATGATGA TCTGGTGCTG CAGCCTAGAG AGAATGCATC 
    AGTCACCTTC ATATTCTTGC CGAAGTTGCT AGGCTCTTCA TCGGCGCATT 
    TGGTTTTGCA GACGAATTTC GGTGGGTTCA TTATACAGGC TAAGGGCATG 
    GCTGTCAGAT CACCTTATCA GTTGGAGCCA CTAGCTGGGA TGGATGTCAT 
    AACAGGTGGA CGGCTGGAGA GGAACTTGTC GATATTCAAC CCTTTTGATG 
    ATTCTCTCTA TGTCGAGGAA GTGGCTGTTT GGATGTCTTC ATTCCAGGGC 
    ACAAAACAAT CTTCTCATAT AGTTTGTCAG TTAGGCCCTT TTGACGAGTC 
    GTTGGAGTTT ACTTCTTTGA GTAGCAACTG GTATACAGCA AGTAGTACTG 
    AATTTGGATT GCCGATGATC CATATCAGGC CTAGTGAGCA ATGGGAGGTG 
    CTTCCTACAC AAAGCAGCAC TGTTGTAGAG TTAAAACTGC AACCTCTTTC 
    AGAAGGAATG GTGTTCGGTG CTATCTGCAT GAAATTACGC AATTGCACAT 
    CTGATAGAGT AGACACTGTT GTTATACCTA TGGAGTTAGA GGTGCGTGCA 
    CGTACCTACC ATGAACCCAC TAACTTAGTT TCGGTCACAT TTGAGCGTGT 
    ATCATCTTGT GCTAGAGTTG GGTCAATTAT TTCCCTTTCT TTAAGGAATG 
    AGGGAACAAA GTTACTGAGG ATTGTAAGGG TAACTGAGGA TAACAGGGAT 
    GGATCAAATA ATTTTGAGGT TAAGTACCTG AATGGACTGA TACTCTTTCC 
    TGATACTGTA ACAGATATAG CGCTGATAAA ATATACTTCA GTTCCAACGG 
    ATAACTCATT TGACAACTGC AATATAGTGG TAGAAACGAA CAGTTCTGTT 
    GGTAGTTCAA TCCTGATACC CTGCCGAGAT GTGATATCTG CAACTCTTTC 
    TTATACGGCT AGCGCTGTTA CTGAATCTGA TGGGCCATTT TCTGAAGATG 
    AGTTATCTGC TAACTCAAGG ACAGGATCTT TGGGCAGCAT TGTAGAAGTA 
    AAAGGCCTGC AACACATGAA GCCAACAATT ACAAGGGCAT ATAAAGCTGA 
    TGATACAGTA CTTAGAAGAT GGAGATCTCA TGGTACAAGA ACTGGGATTT 
    CTGTTCTCAC AGATCAAAAA ATGCTGTTTC CTATTGTCCA AGTTGGATCA 
    CAGTTTTCTA AATGGATAAC CGTCCATAAC CCAAGCCTAG AGCATGCATC 
    CATGCAACTG GTTCTGAATT CTGAGGAAAT TATTGGTCAG TGCAAAACTA 
    TAAATGATGC ATGTGAACAT ACATTCTCGA GCAGGTCCCC TGAAGTTGAC 
    TCAACAGAGA CTAGATTTGG CTTCTCATTA AGTGATGCAG CAATCACTGA 
    GGCCATTGTT GGTCCTTTGG AGAGTGCTTT ACTTGGTCCT ATCATCTTCC 
    GTCCATCAAA TCAGTGCATG TGGTCAAGCA TGGTGTTGAT CAGAAGCAAT 
    ATTTCAGGCA TGGAGTGGCT GCCTCTTCAA GCACATGGCG GACGGCAATC 
    TATTGTCCTT CTGGAGGAAT CTGAACCTGT TTGGAAGCTA GAGTTTAACC 
    TCATTTCCGA TATTCAGAAT AAGTCAGCAT TGTCTAAATC AGAGTTCACC 
    AGCCCTTTGT GCGGTCAACA TTTGTCGAAA GAAATACATG TCAAAAATAG 
    CGGTGACCTT CCTCTTCAAG TGACAAAGGT TAAAATCTCT GGAGCTGATT 
    GTGCTGTGGA TGGATTTTCA GTAGATAACT GCAAGGGATT TAGCTTAGCG 
    CCAAGTGAAT CAATAAGAAT GCTTGTTTCT TTTAAAGCTG ACTTCTCTTC 
    AGCTATGGTT CAGAGAGATC TTGAATTGGC TATGACTACC GGGATTTTCA 
    TAATCCCTAT GACTGCAAAC ATTCCTGTTT GTATGCTTGA CCAGTGCAGA 
    AAGTCGTACC TCAGATCCAT CCATTGGAAA ACATTGATAT TCCTTTTTGG 
    AACTGTATCC GTGTTTGTTC TGGTGTTCGC GAGAGGTGTC CCAACTTCTT 
    TGTCAGGGGG CTCTCAAGAT TGCTATATCA AGATTCATGA TGGGAAAGGT 
    ACCATCGACA AGCCTGTTAA GCCCTCTTTC CTTCAGTGTA GCAGCAAAAC 
    TTCCAGGTCA ACAAGGGAGC ACAAAAGAGA CAAAGAAACT CATAAATACC 
    CTGCGGATAT TCATAATAGC CCCAAGAGGA CAGAAGACAA GAACAATGCA 
    GATGAACAAC TGAATACAAC TTCAACTATG TCTCTGCCCC CTAGTAATAC 
    TGTGGAAG

    Gene models with high sequence identity

    1. AT5G66820.1 [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria -...
      E-value: 8e-10; Score: 63.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RW1 PROTEIN HOMOLOG 2.3e-16
    HMMPfam Protein of unknown function DUF3651 2.2e-21

    See the detailed result >

    AT5G66820.1

    Model type
    Protein coding
    Computational Description
    unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR