K13925

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13925

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13925

Determination of introduced cDNA(s)

  • J023018P15 - Rice Full-length cDNAs - Original: J023018P15

    full reading [+] show sequence

    Nucleotide sequence: J023018P15 - full reading
    GATTCCATTC CAGTGGTAGA AGATCCGAGA TCGAGGAGGA GGTGAGGAGA 
    GGAGCAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGATGGG CATGGAGAGC
    GGAGATGCCC AACTGCCGCT GCTCCACCAC CAGGCTTCCG CATCCAATCA
    GCACTATACC AAGCCCCCCT TCAACTGGAA GGCTCCTGCT CTTATCTTGG
    CCTTTGAATT CTTGGAGAGC ATTGCCTATG CTGGCATCTC CCTCAACTTG
    GTCGTTTATC TTGGAACCGT CCTCCATGGA ACTACCGCCT CTAACGCAGC
    CAATGTTGAT ACATGGAACG GAACCACTTT TCTTACACCG GTGCTTGGAG
    CCTTCTTGGC TGATACATAC TGGGGAAAGT ACAAGACCAT TGCCATCTCT
    ACAGTTTTCT ATCTTATTGG GTTGCTTGTA ATTACCGCCT CTGCTGTCAT
    CCCATCACTA CAACCTGCTC CATGCAATGG GAGCTCATGT CCTCCTGCAA
    CAGGGTTTCA GTATTTTGTC TTCTTCACCG CGCTCTACCT TATTTCGGTT
    GGCACCGGGG GTGTCAAATC AGCATTACTC CCCTTTGGAG CTGACCAGTA
    CAACGATTCA AACCTCGAAG AGAGTAAAAA GAAGCAATCT TTCTTTAGCT
    TGTTCTTCAT TGCTATCAAC CTTGGAGTGT TCATTTCGGG CACTGTCGTC
    GTTTGGATAC AGCAAAATGT TGCTTGGTCT CTCGGATTCG GCATCTCCTC
    AATATGCCTT GTTGTTGCCA CAGTTGCCTT TTTGGCAGGA ACACCAGTGT
    ACAAGGTCCA GCTTCCCAGT GGAAGCCCAC TCAAGAGTGT TGTAATGGTT
    TTTGTTGCCT CTTTTAAGAA GAGAAAACTG GAGGTTCCTG CCGATAACGC
    ACTCCTGTAT GAAGGGGATG ATGCTGATTT AAGCAATGGA CAATCAGTCA
    AACTAGCACA TACTGATGGT TTCAGGTGGT TAGATAAGGC GGCAGTGGTT
    TTTGAGGAGG TGGAAGAGAT AAATAAGGAT GAGGGTGGGG GTGGAGGGTG
    GCTGCAGTGT TCGGTAACGC AGGTGGAGGA AGTGAAGATT CTGCTGCGGA
    TGCTGCCGAT ATGGGTGACC AGCGTGCTGT ACGCGGCTTC CTTGGGTCAG
    ACGGCCACCA CCTTCGTGCA GCAGGGGAAT GCCATGAACA CCAAGATCGG
    ATCCTTCTCT GTCCCGGCGG CATCCCTCAA CTCCGCCGAG GTCATCTTCA
    TGATGATCTG GGTGGTGTTC CAGGACACGG TGGTCGTCCC GATCGCCAGG
    CGCTACACCG GGAACCCCGC GGGGCTGACG CAGCTGCAGC GGATGGGCGT
    GGGGCGGTTG CTGGCGGTGC CGGCGCTGGC GGTGGCGGCC GTGCTGGAGA
    CGTGGCGGCT GCGCAGCGTC AGGGACGGCG GCAACCTGAG CATCGCGTGG
    CAGCTGCCGC AGTTCGTCAT CCTGGCCTGC TCCGACGTCT TCTGCGGCAT
    CGCTCAGCTG GAATTCTTCT ACTCGGAGGC CCCCGTGTCG ATGCGGAGCC
    TCTGCTCGGC CTTCTCCTTC CTGGCGCTCT CGCTGGGCTA CTACGTCAAC
    TCCCTCGTCG TCTCCATCGT CGCCGTCGTC ACCACCACCT CGAACAAGGG
    CTGGCTCCCC GCCGACCTCA ACGACGGCCA TCTGGACTAC TATTTCTGGC
    TCTGGACGGG GATCAGCGCC ATCAACTTTG TGGTGTACGC CGCCTTTGCC
    AAGAATTATA CCGTCAAGAG ACTCGCCGTC CCGCACTCGC ACTGATCGTC
    TCCCTCATCC ACCCAACACT GCCTTGTATT ATTCCAATCA ACCATTCTTG
    TATTATTATT CCACTTGATT CGTTGAGCAT GTATATAAAC CAAATAAAAA
    ATAAACCAAA TAAAGGGCTG AATCCATGCA TTACCTTC

    Gene models with high sequence identity

    1. AT2G02040.1 [+] show detail - peptide transporter 2
      E-value: 2e-124; Score: 443.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.4e-270
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.4e-270
    HMMPfam Oligopeptide transporter 3e-78
    superfamily Major facilitator superfamily, general substrate transporter 1.1e-13
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0

    See the detailed result >

    AT2G02040.1

    Model type
    Protein coding
    Short Description
    peptide transporter 2
    Curator Summary
    Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.
    Computational Description
    peptide transporter 2 (PTR2); FUNCTIONS IN: dipeptide transporter activity, high affinity oligopeptide transporter activity, tripeptide transporter activity, peptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1); Has 8080 Blast hits to 7668 proteins in 1494 species: Archae - 0; Bacteria - 3960; Metazoa - 799; Fungi - 488; Plants - 2224; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR