K13925

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13925

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13925

Determination of introduced cDNA(s)

  • J023018P15 - Rice Full-length cDNAs - Original: J023018P15

    full reading [+] show sequence

    Nucleotide sequence: J023018P15 - full reading 
    GATTCCATTC CAGTGGTAGA AGATCCGAGA TCGAGGAGGA GGTGAGGAGA 
    GGAGCAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGATGGG CATGGAGAGC 
    GGAGATGCCC AACTGCCGCT GCTCCACCAC CAGGCTTCCG CATCCAATCA 
    GCACTATACC AAGCCCCCCT TCAACTGGAA GGCTCCTGCT CTTATCTTGG 
    CCTTTGAATT CTTGGAGAGC ATTGCCTATG CTGGCATCTC CCTCAACTTG 
    GTCGTTTATC TTGGAACCGT CCTCCATGGA ACTACCGCCT CTAACGCAGC 
    CAATGTTGAT ACATGGAACG GAACCACTTT TCTTACACCG GTGCTTGGAG 
    CCTTCTTGGC TGATACATAC TGGGGAAAGT ACAAGACCAT TGCCATCTCT 
    ACAGTTTTCT ATCTTATTGG GTTGCTTGTA ATTACCGCCT CTGCTGTCAT 
    CCCATCACTA CAACCTGCTC CATGCAATGG GAGCTCATGT CCTCCTGCAA 
    CAGGGTTTCA GTATTTTGTC TTCTTCACCG CGCTCTACCT TATTTCGGTT 
    GGCACCGGGG GTGTCAAATC AGCATTACTC CCCTTTGGAG CTGACCAGTA 
    CAACGATTCA AACCTCGAAG AGAGTAAAAA GAAGCAATCT TTCTTTAGCT 
    TGTTCTTCAT TGCTATCAAC CTTGGAGTGT TCATTTCGGG CACTGTCGTC 
    GTTTGGATAC AGCAAAATGT TGCTTGGTCT CTCGGATTCG GCATCTCCTC 
    AATATGCCTT GTTGTTGCCA CAGTTGCCTT TTTGGCAGGA ACACCAGTGT 
    ACAAGGTCCA GCTTCCCAGT GGAAGCCCAC TCAAGAGTGT TGTAATGGTT 
    TTTGTTGCCT CTTTTAAGAA GAGAAAACTG GAGGTTCCTG CCGATAACGC 
    ACTCCTGTAT GAAGGGGATG ATGCTGATTT AAGCAATGGA CAATCAGTCA 
    AACTAGCACA TACTGATGGT TTCAGGTGGT TAGATAAGGC GGCAGTGGTT 
    TTTGAGGAGG TGGAAGAGAT AAATAAGGAT GAGGGTGGGG GTGGAGGGTG 
    GCTGCAGTGT TCGGTAACGC AGGTGGAGGA AGTGAAGATT CTGCTGCGGA 
    TGCTGCCGAT ATGGGTGACC AGCGTGCTGT ACGCGGCTTC CTTGGGTCAG 
    ACGGCCACCA CCTTCGTGCA GCAGGGGAAT GCCATGAACA CCAAGATCGG 
    ATCCTTCTCT GTCCCGGCGG CATCCCTCAA CTCCGCCGAG GTCATCTTCA 
    TGATGATCTG GGTGGTGTTC CAGGACACGG TGGTCGTCCC GATCGCCAGG 
    CGCTACACCG GGAACCCCGC GGGGCTGACG CAGCTGCAGC GGATGGGCGT 
    GGGGCGGTTG CTGGCGGTGC CGGCGCTGGC GGTGGCGGCC GTGCTGGAGA 
    CGTGGCGGCT GCGCAGCGTC AGGGACGGCG GCAACCTGAG CATCGCGTGG 
    CAGCTGCCGC AGTTCGTCAT CCTGGCCTGC TCCGACGTCT TCTGCGGCAT 
    CGCTCAGCTG GAATTCTTCT ACTCGGAGGC CCCCGTGTCG ATGCGGAGCC 
    TCTGCTCGGC CTTCTCCTTC CTGGCGCTCT CGCTGGGCTA CTACGTCAAC 
    TCCCTCGTCG TCTCCATCGT CGCCGTCGTC ACCACCACCT CGAACAAGGG 
    CTGGCTCCCC GCCGACCTCA ACGACGGCCA TCTGGACTAC TATTTCTGGC 
    TCTGGACGGG GATCAGCGCC ATCAACTTTG TGGTGTACGC CGCCTTTGCC 
    AAGAATTATA CCGTCAAGAG ACTCGCCGTC CCGCACTCGC ACTGATCGTC 
    TCCCTCATCC ACCCAACACT GCCTTGTATT ATTCCAATCA ACCATTCTTG 
    TATTATTATT CCACTTGATT CGTTGAGCAT GTATATAAAC CAAATAAAAA 
    ATAAACCAAA TAAAGGGCTG AATCCATGCA TTACCTTC

    Gene models with high sequence identity

    1. AT2G02040.1 [+] show detail - peptide transporter 2
      E-value: 2e-124; Score: 443.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.4e-270
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.4e-270
    HMMPfam Oligopeptide transporter 3e-78
    superfamily Major facilitator superfamily, general substrate transporter 1.1e-13
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0

    See the detailed result >

    AT2G02040.1

    Model type
    Protein coding
    Short Description
    peptide transporter 2
    Curator Summary
    Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.
    Computational Description
    peptide transporter 2 (PTR2); FUNCTIONS IN: dipeptide transporter activity, high affinity oligopeptide transporter activity, tripeptide transporter activity, peptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1); Has 8080 Blast hits to 7668 proteins in 1494 species: Archae - 0; Bacteria - 3960; Metazoa - 799; Fungi - 488; Plants - 2224; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR