K13943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13943

Determination of introduced cDNA(s)

  • J033036J23 - Rice Full-length cDNAs - Original: J033036J23

    full reading [+] show sequence

    Nucleotide sequence: J033036J23 - full reading 
    GATTTCTAGC TAGTTAGTAT CTCATCTCCT TTTTGCTGAG GCTGAGGGAG 
    AGGCAGAGGC TGCCTCACGC ATCCCTGTCG ATCTCGGTCA AGAATGGGGT 
    TGCTGATGAG GCCCGTCGCC TTGCTCATCT ACTGCACCAC CGCCTCCCTC 
    TTCTTCCTCA CCTCCTCCTC CTCCGCCGCC ATCGCCGGTG GCACGCCGGA 
    CGGCTCGGAG GAGTGGGGCT ATGTCCAAGT ACGCCCGAAG GCGCACATGT 
    TCTGGTGGTT GTACCGGAGC CCGCAGCGCG TGAACAACAA GGGCAGCACG 
    CCATGGCCGA CCGTGCTCTG GCTCCAGGGA GGCCCGGGCG CTTCGGGCGT 
    GGGTTATGGC AACTTCATGG AGATCGGGCC GCTGGACACC AACCTTAAAC 
    CCCGCCCATC CACCTGGCTC TCCAAGGCCG ACCTCCTCTT CGTCGACAAC 
    CCAGTGGGCA CCGGGTTCAG CTACGTGGAG GGCGGCGACA GGACATTGCT 
    GGCGCGCACG GACGCCGAGG CAGCCACCGA CCTCACCACT CTGCTCTCCC 
    AACTCTACCG CAGCAACAAC ACGCGGCTGC AGGGGAGCCC ACTTTACATC 
    GTCGCAGAGT CCTACGGCGG CAAGTTCGCC GTCACCACCG CCTTGGCCGC 
    GCTCAAGGCC ATCCACGCCG GCCGCCTCGC CGCCAGCCTC GCCGGAGTTG 
    CGCTTGGTAA TAGCTGGATT TCACCCGAGG ACTCGGTGCT TTCGTGGGGG 
    CCATTGCTGT ACCAAGTGTC CCGCCTTGAC GAGAACGGCC TCTACCTCTC 
    CGACAGCCTG GCGCAGCAGA TCAAGGCGCA GGTGAAGGCA GCACAGTTCC 
    TGGAGGCCGA GAACACATGG CAAAGTCTGG AGTCCATCAT TCTCGAGCAA 
    GCCAACTTCA TCGACTTCTA CAATTTCCTC AAGGATGACT CGTCGTCGGA 
    TGCTAATTTG GAGCAGCAGC AGCGGCAGAG GCTACTGGCG TCGCTGGGGC 
    AGTCGAGGAG GCGCTACTCC AGCTACCTGA GCTCCAAGGT CACAACGGAA 
    GGCGGCTTCG AGGGCATCAT GAACACCGTC ATCAGGGATA AGCTCCGGAT 
    CATACCCAAA AACGTCACCT GGAGCGAGCA GTCAGACGAT GTGTTCGAAG 
    CTCTTGCAGG AGACTTCATG AAACCCAGAA TCCTTGAGGT CGACGAGCTT 
    CTCAACCTTG GCCTCAACGT CACAATCTAT AGCGGACAGC TTGATCTGAT 
    CTGTGCGACC AAGGGAACAT TGGATTGGAT TCAGAAACTC AAGTGGGATG 
    GTCTGAAGAA CTTCACAAAC TCACGCAGAG TGCCGCTCTA CTGCAGTGGT 
    GGTGAAGCAG CTGGCACCCA AGCCTTCCTC AAATCTTACA AGAATCTCAA 
    ATTCTACTGG ATACTGGGAG CTGGCCACAT GGTACCAATA GACAACCCTT 
    GCCCTGCATT GAAGATGCTT GGTGACATTA CACAATCTCC TGCTCAGTAG 
    AAAAGAGGAG GATGACACTA CATGCTGACA CCAACTGAAG ATTCTTTTTC 
    TCCTTAATTT CTACTTTCAC CTTTTTACAC AGAAAAGAAA AAGGATATCA 
    TAGCATTGAT GAGATAAGAA AAGATAGCAG AGTGATATAA ATAGAGAGAG 
    AGAGATCTGT TTCACTTTAT ATTATAGTAC TGGTGCAGCT GGTTTTTCGG 
    TGGCAGGGTA CAATATAAAA TCAAATTTAT TGCATGCAGC TTGC

    Gene models with high sequence identity

    1. AT2G27920.1 [+] show detail - serine carboxypeptidase-like 51
      E-value: 3e-127; Score: 452.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    superfamily alpha/beta-Hydrolases 2e-104
    HMMPfam Peptidase S10, serine carboxypeptidase 2.2e-72
    Gene3D no description 7.7e-96
    FPrintScan Peptidase S10, serine carboxypeptidase 8.2e-12
    FPrintScan Peptidase S10, serine carboxypeptidase 8.2e-12
    FPrintScan Peptidase S10, serine carboxypeptidase 8.2e-12
    FPrintScan Peptidase S10, serine carboxypeptidase 8.2e-12
    HMMPanther RETINOID-INDUCIBLE SERINE CARBOXYPEPTIDASE (S 1.4e-173
    HMMPanther Peptidase S10, serine carboxypeptidase 1.4e-173

    See the detailed result >

    AT2G27920.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 51
    Computational Description
    serine carboxypeptidase-like 51 (SCPL51); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 50 (TAIR:AT1G15000.1); Has 3757 Blast hits to 3498 proteins in 425 species: Archae - 0; Bacteria - 395; Metazoa - 679; Fungi - 928; Plants - 1340; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR