K13944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13944

Determination of introduced cDNA(s)

  • J013089A03 - Rice Full-length cDNAs - Original: J013089A03

    full reading [+] show sequence

    Nucleotide sequence: J013089A03 - full reading 
    GATTTTCCCA GAATTTTTTT TTCTTCTAAT TTTCTTCTTC CCGTTTCCCG 
    ACTCAAGTCA GCGGTTAGGG TTCCGAGATC TCCGCCTCGC ACGGCAGCCA 
    TGGCGGCAAG CACTTTTAGC ACAGTCAAGG TGAGCAATGT GTCACTGAAA 
    GCATCACTGC GAGATGTAAA GGAATTCTTT TCCTTTTCTG GTGACATTGT 
    GCATGTTGAA ATGCAAAGCA GTGATGAGCT GTCTCAAGTT GCCTACATTA 
    CTTTTAAAGA CAATCAAGGA TCTGAGACGG CTATGCTTCT TACGGGTGCC 
    ACAATAGTTG ATATGGCTGT CATTGTCACG CCAGCTACCG ATTATGAGCT 
    ACCAGCTTCT GTTTTAGCTG CTCTAGAGCC CAAGGATAGT AAGCCTTCTG 
    CCCTTCAAAA GGCAGAGGAC ATTGTTGGGA CCATGCTGGC CAAGGGATTC 
    ATTTTAGGTA GGGATGCACT GGACAGAGCA AAAGCCTTGG ATGAGAAGCA 
    TCAACTCACA TCAACTGCAA CTGCTAGAGT ATCTTCCTTT GACAAGAAAA 
    TGGGTTTAAG CGAGAAGATC AGTGTTGGCA CTTCGGCTGT AAATGATAAA 
    GTGAAGGAAA TGGATCAGAA ATACCAAGTC TCTGAGAAGA CAAGGTCAGC 
    ACTGGCAGCT GCTGAACAGA GTGTCTCTAC TGCTGGATCT GCCATCATGA 
    AGAACAGGTA TGTCCTTACT GGAGCAGCAT GGGTAACTGG TGCTTTCAAT 
    AAGGTTGCCA ATGCTGCAAA TGATGTTGGC ACAAAAGCAA AGGAAAAAAT 
    AGCATCTGAG CAGGAGCACA AGACTGTAGA GCTTGAGTCT GCAGAACCTA 
    ACAGCTCAGA AGGCCATGGA ACACAAAAGG ATGTGGATGG TGAATTCGCC 
    AAGATACAGG TCTCTGAATC CCCTGAAGAT ATTCCCATCT CTACGACTGC 
    AACCGTCCCC ATTACTGATG AGGATTCCAG TCAGGCGTCT CCACCTGCCG 
    CCTCTCCCAA AAAGCCAGAA CCTGCGCAGG GGTTGATACT ATGATTCCAT 
    TGATACATGA GTGTAAATAG ACACGAAATG GTCGCTGAAT TCAGGCTGTA 
    GTGTTGTTGT GATCCTTCAA ACTAAACCTC TTTGAAGTTT GGATTTGGGA 
    CCTGGAATAG GTTGCAGTTT GTAGCATCTA TTTTTCTCAA TTGAACATCA 
    TTTTCTTGCA TTAGCGACCT TCTTAATAGG CACCAACCAT TGATATACCA 
    TTTTGACATG GGATATTGAT GTGGATTTGG TGGAATATAT GAGAAATTAT 
    GTTTGAGTAC TTCACTGC

    Gene models with high sequence identity

    1. AT4G17720.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 8e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 0.0093
    HMMPanther ALDO/KETO REDUCTASE 6.8e-84
    HMMPanther Aldo/keto reductase 6.8e-84
    superfamily RNA-binding domain, RBD 8e-10
    ProfileScan RNA recognition motif, RNP-1 9.695

    See the detailed result >

    AT4G17720.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G46870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR