K13944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13944

Determination of introduced cDNA(s)

  • J013089A03 - Rice Full-length cDNAs - Original: J013089A03

    full reading [+] show sequence

    Nucleotide sequence: J013089A03 - full reading
    GATTTTCCCA GAATTTTTTT TTCTTCTAAT TTTCTTCTTC CCGTTTCCCG 
    ACTCAAGTCA GCGGTTAGGG TTCCGAGATC TCCGCCTCGC ACGGCAGCCA
    TGGCGGCAAG CACTTTTAGC ACAGTCAAGG TGAGCAATGT GTCACTGAAA
    GCATCACTGC GAGATGTAAA GGAATTCTTT TCCTTTTCTG GTGACATTGT
    GCATGTTGAA ATGCAAAGCA GTGATGAGCT GTCTCAAGTT GCCTACATTA
    CTTTTAAAGA CAATCAAGGA TCTGAGACGG CTATGCTTCT TACGGGTGCC
    ACAATAGTTG ATATGGCTGT CATTGTCACG CCAGCTACCG ATTATGAGCT
    ACCAGCTTCT GTTTTAGCTG CTCTAGAGCC CAAGGATAGT AAGCCTTCTG
    CCCTTCAAAA GGCAGAGGAC ATTGTTGGGA CCATGCTGGC CAAGGGATTC
    ATTTTAGGTA GGGATGCACT GGACAGAGCA AAAGCCTTGG ATGAGAAGCA
    TCAACTCACA TCAACTGCAA CTGCTAGAGT ATCTTCCTTT GACAAGAAAA
    TGGGTTTAAG CGAGAAGATC AGTGTTGGCA CTTCGGCTGT AAATGATAAA
    GTGAAGGAAA TGGATCAGAA ATACCAAGTC TCTGAGAAGA CAAGGTCAGC
    ACTGGCAGCT GCTGAACAGA GTGTCTCTAC TGCTGGATCT GCCATCATGA
    AGAACAGGTA TGTCCTTACT GGAGCAGCAT GGGTAACTGG TGCTTTCAAT
    AAGGTTGCCA ATGCTGCAAA TGATGTTGGC ACAAAAGCAA AGGAAAAAAT
    AGCATCTGAG CAGGAGCACA AGACTGTAGA GCTTGAGTCT GCAGAACCTA
    ACAGCTCAGA AGGCCATGGA ACACAAAAGG ATGTGGATGG TGAATTCGCC
    AAGATACAGG TCTCTGAATC CCCTGAAGAT ATTCCCATCT CTACGACTGC
    AACCGTCCCC ATTACTGATG AGGATTCCAG TCAGGCGTCT CCACCTGCCG
    CCTCTCCCAA AAAGCCAGAA CCTGCGCAGG GGTTGATACT ATGATTCCAT
    TGATACATGA GTGTAAATAG ACACGAAATG GTCGCTGAAT TCAGGCTGTA
    GTGTTGTTGT GATCCTTCAA ACTAAACCTC TTTGAAGTTT GGATTTGGGA
    CCTGGAATAG GTTGCAGTTT GTAGCATCTA TTTTTCTCAA TTGAACATCA
    TTTTCTTGCA TTAGCGACCT TCTTAATAGG CACCAACCAT TGATATACCA
    TTTTGACATG GGATATTGAT GTGGATTTGG TGGAATATAT GAGAAATTAT
    GTTTGAGTAC TTCACTGC

    Gene models with high sequence identity

    1. AT4G17720.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 8e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 0.0093
    HMMPanther ALDO/KETO REDUCTASE 6.8e-84
    HMMPanther Aldo/keto reductase 6.8e-84
    superfamily RNA-binding domain, RBD 0.0000000008
    ProfileScan RNA recognition motif, RNP-1 9.695

    See the detailed result >

    AT4G17720.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G46870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR