K13945

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13945

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13945

Determination of introduced cDNA(s)

  • J013031E23 - Rice Full-length cDNAs - Original: J013031E23

    full reading [+] show sequence

    Nucleotide sequence: J013031E23 - full reading 
    GGGAGGCCTC CAGTTTGCTT CATCGCCATT GGAGAGGAGA GCTCATCGGG 
    TGCGGAGAAG GGGAGATCGA TGGCGACGTG CTCCCGCCCA CTCTTCGTCC 
    CCGCTTCCGC CGCCGCCGCC TCGCCGTCGC CGGCCGCAAG CCGTCGGGGC 
    GCTCCTCTCG TACGCCTGCA CGCGGTGGCA ATTGTCTCGA TATGGGAACC 
    TCGTCGTCAT CTGCGTGCTC ACATGAGCCT CTGCTGTAAG GCAACGAGGA 
    GGTCCAGTGG TGGTTTAACT ACTGGACATC CTATCTCCGC ATTGCCGCGG 
    GCAATAAAGA GAATACTGTC AAGCTATCCT TCCCTGCTCA CCAGCCTGGG 
    TGGTAATCTT GCTCGAGGCT ACAAGGCAGC CAAGCCCTTC CTGTCAATTG 
    GCTTTGGCCG TGTGGTTTTG GGGATGGTGC TCGTCATGTC TGTATCTGCA 
    GCCACCTATA CAGCACCTTC ATCATTGGCA CTCACGGAGG AAAATTTGCT 
    TTTTCTGGAG GCTTGGCGTG CAGTTGATCG TGCATATTAC GACAAATCTT 
    TCAATGGGCA GAGTTGGTTT AGATACCGTG AAAATGCTCT CCGCAATGAA 
    CCAATGAATA CACGGGAAGA AACATATGCT GCAATAAAGA AAATGCTTTC 
    AACATTGGAT GACCCATTCA CTCGTTTCTT GGAACCCGAG AAATTCAAGA 
    GTTTGCGGGA AGCCTGGCTC GCAAGGAACA CTCACAGGTG TAGGTTTATC 
    AATTAGCTAC CCAATGGCGC TAAATGGATC TCCTTCAGGG CTTTCTGTTA 
    TGTCAGCAAC CCCAGGAGGT CCTGCAGAAA ATTCTGGTAT TCTTCCTGGA 
    GATGTAATAT TGGCAATTGA CAACAGAAGC ACGGAAGATA TGGATATATA 
    TGATGCAGCA CAACGCTTAC AGGGTCCTGA AGGAAGCTCA GTGGATTTGG 
    ATATTCGTAG TGGGTCCAAT ACCAGGCATG TTGTTCTGAA GTAAGTTCCT 
    TCCCATGATC CCCTTGTAGA TCTTGAAAGC AAACAGTTAC TTTTACTTCA 
    TTGGTCATTG CATTGTTTGA TTTATCATAG GCGACAAACT GTCACTTTAA 
    ATCCGGTAAG GTCGAGGATG TGTGAGATTC CAGGTGCAAA AGACAATTCA 
    AAGGTTGGTT ACATTAAATT GACAACTTTC AACCAAAACG CCGCAGGTTA 
    GTGACTTTGA GTGGTTCTAA TGCCTTTATA AAACACCATA TATTTCCAGA 
    TGTTATGTCC TGCTGATCAT ATTAATTGAT TGTCTTCTCC CAGGATCTGT 
    TAAGGAAGCA CTTCAGAAAT TAAGGGAGAA CAATGTGAAG TCTTTTGTGT 
    TGGATCTGCG GAATAACAGC GGTGGCCTTT TTCCTGAAGG AATCGAAATT 
    GCAAAGATTT GGATGGACAA GGGTGTTATT GTATACATAT GTGATAGCCA 
    GGGTGTTCGT GACATTTACG AGGCAGATGG AATTAGTACG GTTGCTGCAT 
    CGGAACCTTT GGTCGTGCTG GTAAATAAAG GGACCGCAAG CGCAAGTGAG 
    ATCCTTGCTG GAGCACTGAA AGACAATAAA AGGGCAGTGA TATATGGGGA 
    ACCAACATAC GGCAAAGGGA AGATCCAATC GGTGTTTGCG TTATCTGATG 
    GCTCTGGCTT AGCTGTGACC GTTGCGCGCT ATGAAACTCC CGCGCATACT 
    GACATAGACA AGGTCGGCGT GATCCCGGAC CGCCCGCTGC CGGCGTCATT 
    CCCCACGGAT GAAGACGGCT TCTGCAGCTG CCTCAGGGAC TCCAACTCTG 
    CCTGCAATCT TAACGCTGCT CAGCTGTTCA CAAGATGACG ACGCCAGGGC 
    TAGAGAAAGG CTCAATTTGG CCAAAAAAAA TTTTCGCAGT TTGGACTGAC 
    CGAGTTCCAT CAAACCATGT TAATTGTTTA TTTGTTTTGT TTAACGTTTA 
    TCTAGAATCC CAATTGTAGC TTCCTGGTGG AATCATGCAG TTAAATGTCA 
    CTGTAAATCA TGTTTAACTG TAAATCATTT TTTCCCCCGC TTAACACTTG 
    GGAACACAGA TACACTGGGA ATTTTACAGT ATTGATCG

    Gene models with high sequence identity

    1. AT4G17740.1 [+] show detail - Peptidase S41 family protein
      E-value: 2e-157; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PDZ/DHR/GLGF 11.401
    HMMPanther PERIPLASMIC SERINE PROTEASE 3.1e-06
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 3.1e-06
    superfamily ClpP/crotonase 3e-11
    superfamily PDZ/DHR/GLGF 4.6e-16
    superfamily ClpP/crotonase 4.4e-47
    HMMSmart PDZ/DHR/GLGF 9.6e-15
    HMMSmart Peptidase S41 5.1e-58
    Gene3D no description 4.4e-23
    Gene3D no description 1.5e-14
    Gene3D no description 5.3e-41
    HMMPfam PDZ/DHR/GLGF 6.8e-09
    HMMPfam Peptidase S41 3.1e-45

    See the detailed result >

    AT4G17740.1

    Model type
    Protein coding
    Short Description
    Peptidase S41 family protein
    Computational Description
    Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR