K14012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14012

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14012

Determination of introduced cDNA(s)

  • J023141K03 - Rice Full-length cDNAs - Original: J023141K03

    full reading [+] show sequence

    Nucleotide sequence: J023141K03 - full reading 
    GGTCTGAACG GGGGGAGCTG TGGCCACACC TCTCCCCCCA CCTCCTCCTC 
    CTCTAGGGTT TCCTCCCAAT CCCCTCCATG GCCAAGACCA AGCAGGGCAA 
    GAAGGACGTC GAATCCTACA CCATCAAGGG CACCACCAAG ATCGTCCGAG 
    TGGGGGATTG CGTGCTGATG CGGGCGTCGG ACACGGAGAA GGCGCCGTAC 
    GTGGGGAGGG TGGAGAGGCT GGAGACGGAC GGGAGGGGGA GCGTGCGGGT 
    GCGGGTGCGG TGGTACTACC GGCCGGAGGA GTCCAAGGGC GGGAGGAGGC 
    AGTTCCATGG CGCCAAGGAG CTGTTCCTCT CCGACCACTT CGACACCCAG 
    AGCGCCCACA CCATCGAGGG CAAGTGCGTC GTCCACTCCT TCAAGAACTA 
    CACCAAGCTC GACAACGTCG GCCCCGAGGA CTTCTTCTGC CGCTTCGAGT 
    ACAAGGCCGC CACCGGCGCC TTCACCCCCG ACCGCGTCGC CGTGTACTGC 
    AAGTGCGAGA TGCCGTATAA CCCGGATGAT CTAATGGTGC AGTGCGAGGG 
    ATGCAAGGAC TGGTTCCATC CATCTTGTAT GGGAATGACC ATTGAGCAGG 
    CCAAAAAATT AGATCATTTC CTGTGCGCAG ATTGTGTCAA AGAAAATGGC 
    ACGAAGAGAC CTTCAAATTC ATATCCAGCA TCATCAAATT CTGATTCTAA 
    GGTTGAGCCA AAAAAGCGGA AGAGGTAATT GCTGTGACAC GAGCCATCCG 
    TGGTGAGGAG ATGCACTGTT TATGGCGTCA GCTCTTCATT GCTGGTGCAA 
    AGTCAAAACG TGGAGGGTGT ACAGTGCAGA TGAAGAGCTA GGCTAGGTCC 
    AAGATCGCGT TAACTTATCA TTTGCCCGAA TTTGGGAACG TTTCCATCAG 
    TCTAGGCAAA AGAACGAACT TCATTGATGC TGTTGGCTCG TTCAGTTGTA 
    GCCAGTGTGG ACTGGATGAG TGTCAGCGTG TTTTAGCTTT TTGCCTGGTA 
    CAGGAAAACG TTCCCAGCGT GGATGATGTT GATGATAGCT TAACTGTAGT 
    TTC

    Gene models with high sequence identity

    1. AT4G22140.2 [+] show detail - PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
      E-value: 1e-95; Score: 346.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Bromo adjacent homology (BAH) domain 4.8e-25
    HMMPfam Zinc finger, PHD-finger 1.4e-10
    HMMPanther PHD FINGER TRANSCRIPTION FACTOR 3e-32
    PatternScan Zinc finger, PHD-type, conserved site 0
    ProfileScan Zinc finger, PHD-finger 9.178
    ProfileScan Bromo adjacent homology (BAH) domain 24.095
    HMMSmart Bromo adjacent homology (BAH) domain 6.4e-42
    HMMSmart Zinc finger, PHD-type 2.5e-09
    superfamily Zinc finger, FYVE/PHD-type 5.9e-12
    Gene3D no description 1.6e-16

    See the detailed result >

    AT4G22140.2

    Model type
    Protein coding
    Short Description
    PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
    Computational Description
    EARLY BOLTING IN SHORT DAYS (EBS); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: positive regulation of flower development, regulation of transcription, DNA-dependent, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR