K14013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14013

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14013

Determination of introduced cDNA(s)

  • J033131A11 - Rice Full-length cDNAs - Original: J033131A11

    full reading [+] show sequence

    Nucleotide sequence: J033131A11 - full reading 
    GGCTCGTTCC ATTTCCATTC CTACGCCGAG GTCTTCTTCC CCACTCTCTC 
    CCTCCCACGC CGCCGCCCCC GCAAACCCTA GCGAACGCAG CGGAGAGAGG 
    AGAGAGCGCC ATGGCCGTGG AGGTGGCGAC GCAGAAGATC AGGTGGGGAG 
    AGCTCGAGGA GGACGACGAG GGGGACCTCG ACTTCCTGCT CCCGCCGCGC 
    GTGGTCTCCG GGCCCGACGA GAATGGGTTC AAGAAGGTGG TCGAGTATCG 
    CTTCGACGAC AAGGGGAACA AGGTGAAGGT CACCAGGACC TTCCGCGTCC 
    GCAAGATCGC CCGCGCCCGC CTCTCCAAGA GCGCCATCGA GCGCCGCTCG 
    TGGCCCAAGT TCGGCGACGC CGTGCAGGAG GACGTCGGCG CGCGGCTCAC 
    CATGGTGTCC ACCGAGGAGA TCGTCCTTGA GCGCCCACGC GCCCCAGGGA 
    GCAAAGCTGA AGAACCAAGT GCTTCTGGTG ATCCACTGGC AAGCAAGAGT 
    GGTGCAGTTC TCATGGTTTG CAGAACCTGT GGGAAGAAGG GTGATCACTG 
    GACCTCAAAG TGCCCCTACA AGGATCTAGC TCCCCAGACA GAAGCTTTTG 
    TGGACAGGCC TCCCACTGCT GATGGCTCTG GACCTCCAGG TGGCGCCGTG 
    AAGGGAGCAT ATGTTCCTCC AAGCATGAGG TCTGGTGCTG TTGATAGGGT 
    TGGACATGAC ATGAGGCGTA GGAATGATGA GAACTCTGTC CGTGTGACCA 
    ATCTATCAGA GGACACCCGT GAACCCGACC TACTTGAGCT ATTCCGCACA 
    TTTGGTCCAG TTAGCCGTGT CTACGTTGCG GTGGATCAGA AGACTGGAGC 
    AAGCAGGGGG TTCGGCTTCG TCAACTTTGT TCACAGAGAG GACGCTGAGA 
    AGGCTATCAG CAAGCTCAAT GGTTATGGTT ATGATAACCT TATCCTTCGT 
    GTTGAGTGGG CAACACCAAG GCCAAATTAA TTTTGTTACT CCCTGCAAGC 
    GTTACATACT TTTCATGAAT GTTCGATCAG TATGTCTCTT GAAATAGTAC 
    TTTTGGTTTG CGCATATCCT GTGTCCTGAA CTTAAGCTGT ACTATTTTTG 
    CTTGGACGAG AATAACTGAA CTCGCAGCTA TTTCCTATAT CAGCTGATAT 
    TTGC

    Gene models with high sequence identity

    1. AT3G11400.1 [+] show detail - eukaryotic translation initiation factor 3G1
      E-value: 1e-107; Score: 386.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 18.803
    HMMSmart RNA recognition motif, RNP-1 1.5e-23
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 9.6e-108
    HMMPfam eIF3g 2.7e-37
    HMMPfam RNA recognition motif, RNP-1 3.8e-20
    superfamily RNA-binding domain, RBD 2.8e-27
    Gene3D Nucleotide-binding, alpha-beta plait 1.1e-26
    HMMPIR Translation initiation factor 3, RNA-binding subunit 1.4e-101

    See the detailed result >

    AT3G11400.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 3G1
    Curator Summary
    One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).
    Computational Description
    eukaryotic translation initiation factor 3G1 (EIF3G1); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G2 (TAIR:AT5G06000.1); Has 999045 Blast hits to 996617 proteins in 36057 species: Archae - 21687; Bacteria - 600727; Metazoa - 203286; Fungi - 24712; Plants - 56079; Viruses - 69236; Other Eukaryotes - 23318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR