K14026

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14026

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14026

Determination of introduced cDNA(s)

  • J023054A11 - Rice Full-length cDNAs - Original: J023054A11

    full reading [+] show sequence

    Nucleotide sequence: J023054A11 - full reading 
    TGGTGGTAAC ATTCGGTGTG GTAGTGGGTA TACTCGTCCT CCTCTTCGTG 
    CTCGTCCTCG TCGTCACCAT CGAGGGCGTC TGCAAGCGCC GCTCCTCCTC 
    CTGATTCCGC CGCGGTCGCT AGCCCTAATG CGCGGGGGCC TCCTCGTCCT 
    GCTCCTCCTC ACCGCGGCCG TCGCCGGCGG CGGCGGCCAC GAGGGCTCCT 
    CCTCCTGCCC CTTCCACGCC CACGACAAGC CCCACGATGA TCACCACCAC 
    GGCCACGGCC ACGGCCACGG CCACAGCTGC GGCGGCGGCG GGGACGACTC 
    CCACCACGTG CACCATCATC ACCATGGGCA TGGGCATGGC CATGACGGCG 
    GGATCCAGCG GCGGCTTCTC CCCGAGGAGC TCGCGGAGGA GGCGGATCTC 
    GAGCTCGACT CCTTCGGCGA TCACCACCAC CACCACCACC ATCACCATGA 
    ACACCACCAC CACGACCACC ACCATGGCCA CGGCGACTTC CAGGCCGAGT 
    TATCACCCTT GGGTATGTGG CTGAGTGCCA TGGGATGCTC GCTTCTGGTC 
    AGCATGGCGT CGCTCGTCTG CCTCGTCCTG CTCCCAGTAA TCTTCTTCCA 
    GGGGAAGCCG TCCAAGACCA TGGTGGATTG CCTTGCCATC TTCGGGGCAG 
    GTGCGATGCT TGGGGATTCA TTTCTTCATC AACTGCCACA TGCCTTTGGT 
    GGAGGGCATT CTCATACACA TGATCATCAG AATCATAATC ATTCTCATGA 
    GCATTCACAT GCACACTCTC TGGAAGATCT TTCTATTGGT TTGTCTGTTC 
    TATTTGGCAT TGTGTTTTTC TTTATTGTTG AGAAGATTGT GAGGTATGTG 
    GAAGACAATT CTCAGAAAGG GGCTCATGGC ATGGGCCACC ATCATCACCA 
    TCATAAACGA CACGATAGGA GCGACAAGGC CAAGTTGAAT CACGCAGAAA 
    AGGATCATGA GGATAAAGGC GTAAATCAAG CAGAAAAGGA ACCTTCGCAT 
    GATGGTGCAA TTGAGAAAAC AGATGGTGTA ACTCGTGCTG ATTCAAAATC 
    TGCAATCCGT AAGAGGGGCT TATCTTCTGG TTCCAATTCC GCTGATAGAG 
    AGCCTGTCAA TTCTGAAAGT GACCCTGCCC CTAACAAAGC ATTATCAAGT 
    GAAGATTCCT CTGTTTCCAA TTCGAATATG GTGTTCGGCT ACCTCAACCT 
    TTTCTCAGAT GGTGTTCATA ACTTTACTGA TGGGATGGCC CTAGGGAGTG 
    CTTTTCTGCT ACATGGTTCT GTTGGAGGAT GGTCGAGAAC TCTATTTCTG 
    CTTGCACATG AACTTCCTCA AGAGGTCGGA GATTTTGGTA TCCTGGTGCG 
    CTCAGGATTC ACTGTAACTA AAGCCCTATT TTTCAATTTT CTCTCTGCGT 
    TGGTTGCTCT TGCTGGAACA GCACTGGCAT TGTCTTTGGG AAAAGATCCA 
    GGGCATTCTT CTTTGATTGA GGGATTCACT GCTGGTGGCT TTATTTATAT 
    TGCTGTTGCT GGAGTCCTCC CAGAGATGAA TGATCAGAAA ACAACCGTCA 
    AAAGCTCGAT GATTCAGTTG GTTTCCCTGA CAATGGGAAT GCTGGTTGCC 
    CTCGGCATAT CTCTAGTAGA ATGATGACGG AATTTCTGGT TGCAGCTTTA 
    GGGCCTATTG TACTTAAGCC AAGCGGGGAA GATGATTATA TCTTCGGTTT 
    CTGCTCCACG GATGCACTCA GCCACAGAGT AAGTTCGAAT GATGGCAAGA 
    ATAACAAGCA TCACTACTCA CTAGTAGATA TGAGTACCTC TTACAATAAA 
    ACACATCCCT GTTGGCATCA ACGGTAGATG TGAGTATGTG ACCCATGACA 
    GAATTAGTGG TAAGCACTGA ATGGAACCAT GGAAGTGCTG CGTTCATGGG 
    CGTCTCAGGC TCTGAGTCTG CCATCTTGAT TCCAGACATC GCCTTTCTAG 
    TTTTTCTAGT TTCTGCACTG CTCCAATAGT AACTTCCCAC ATGGAACTGA 
    TCACTGATGA AGCAGACCGT TCGGTAAATC GACGGTGGTC ACCCACCGGC 
    GTCACCGGCA GGCTCGACCG GGAGATATGC CGATGGTCCT CCTCCCCCAC 
    CGGTTGATCT ACCTCAGGTA CAGTGCTGTC TCCCAACACA TAAATGTTGT 
    GCAGGGGTAG AGAGCCCATG GCAGAGAACG GATATGAAGG ATCTCCAATA 
    ATTGCGTGTG TCGTCAGGGG GGAGGGGGGC AACAGCAACA TGGTGGTCAC 
    GTTCTCGTGG ATCCAAAACT CAAATATAGG TATAGACGCC AAAAGAACAA 
    TGAAATGTGT CCTTCAACCT TACTCTATTT TAGCCTCACT TTTTTTTAAG 
    TGCTTAGAGC ATCTTTAAGA GAGTTATCAA AATTGGCTCT CATATATTCA 
    TATAAAGATC AGTCTCTCCA TAATACTCTC TCCATCTCTT TCTTCACACT 
    CCAACTGACT CCATCCCACT CTCCATGTTC TAATGGACAT ATTTATAAGG 
    GTTATGATTT AATCCAAATA AGTTGTAACA GTAATGGATT GTAGATGCTT 
    TGATG

    Gene models with high sequence identity

    1. AT1G68100.1 [+] show detail - ZIP metal ion transporter family
      E-value: 2e-93; Score: 340.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc/iron permease 1.1e-57
    HMMPanther IAA-ALANINE RESISTANCE PROTEIN 1 9e-151
    HMMPanther ZINC TRANSPORTER SLC39A7 (HISTIDINE-RICH MEMB 9e-151

    See the detailed result >

    AT1G68100.1

    Model type
    Protein coding
    Short Description
    ZIP metal ion transporter family
    Curator Summary
    member of IAA-alanine resistance protein 1
    Computational Description
    IAA-ALANINE RESISTANT 1 (IAR1); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); Has 3060 Blast hits to 2483 proteins in 472 species: Archae - 4; Bacteria - 929; Metazoa - 1358; Fungi - 209; Plants - 119; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR