K14044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14044

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14044

Determination of introduced cDNA(s)

  • J013070J15 - Rice Full-length cDNAs - Original: J013070J15

    full reading [+] show sequence

    Nucleotide sequence: J013070J15 - full reading 
    GCCCCTCCAC TTCTCCTTCT CCTGCGCCGC CTCATCTTAT CTCGCCAATC 
    CCCCTTCGTC GCGCGCGCAA GGCTAAACCC TAGCTCCTCC GCGGCTCCGC 
    CCCCACCGCC TAAACCCTAG TTCGGAGAGT TGCGTGCGGG CGTGGTGCGG 
    GAGGATGGCC GAGCCCTCCA AGGTGATCCA CATACGGAAC GTCGGGCATG 
    AGATCTCCGA GAGCGAACTG CTCCAGGTGG TGCAGCCGTT CGGCACTGTC 
    GCCAAGCTCG TCATGCTGCG TGCTAAGAAC CAGGCTCTCG TCCAGATGGA 
    GGATTTAGCT TCTGCTGTGA ATGTGATCCA ATACTACAAT ACAATTCAAC 
    CCAGTGTAAG GGGAAGAAAT GTTTACTTGC AATATTCATC CCACCAAGAA 
    TTGACTACTG ATCAGAGCTC TCATGGACGA AATCCTGATC AGGCTTTCAA 
    ACCCTCATAC AATATCAGTC ACGTCAAAGT GCAATACAAG CTTATGGTGC 
    TTTACATGGA CGGAACATAT ATGATGGTTG CTGCCAGCTA GACATTCAAT 
    ATTCTAATCT CAGCGAATTG CAAGTTCACT ACAACAACGA TAGATCTAGA 
    GATTTCACAA ATCCATCTTT GCCTACAGAA CAACGCTCAA GATCATCTCA 
    GCCTAGTTAT AATGATCCAA GCAGTTTGTT TGGTTTCCAG CAACCTGGAG 
    ATCCGTATGC ACAGATGAGT AAGGCAGCAA TGATCGCTGC TGCTTTTGGT 
    GGAACATTGC CTCCTGGAGT GTCTGGCATC AATGACCGTT GCACACTTCT 
    AGTTAGCAAT CTGAACACTG ATAAAATTGA TGAGGATAAG CTCTTCAACC 
    TTTTCTCAAT GTATGGGAAT ATCGTGCGTA TCAAGATACT CAAAAATAAA 
    CCAGATCATG CCCTCATCCA GATGGCTGAC GGGCTTCAGG CTGAGCTTGC 
    TGTACTGTAT TTAAAGGGAG CAATGCTATT CGGAAAGAAG CTTGAAGTGA 
    ACTACTCCAA GTACCCAACC GTTACTGCTG ATCCAGATGC ACGTGACTAC 
    TCAACTTCTC ACCTCAACAG ATTTAACAGC AATGTGGTGA AGAACTACCG 
    CCACTGTTGC GCCCCAACCA AGATGATCCA CATCTCAGCG CTTCCACAGG 
    ACATAACTGA AGATACCATC CATTCCCTTG TTGGTGAGCA TGGGACTATC 
    GCCAACTCAA GACTGTTCGA GACGAACGGC AAAACGCAGG CCCTTGTGCT 
    GTTTGAAAGC GTGGAAGAGG CAACAGAGGC GCTCGTGGAG AAGCACGCAA 
    GCAAGCTGGA CCGAACCAAC ATCAGGATTT CCTTCTCACA GATGCAGAAT 
    ATATAGTTCT TTCCTGGGAA TTGTGAGGAG CCAAAGCTAT AAGCTTACCT 
    TAACTTTTGG ATTTCGTGCA CTTAGCTTGC ATGAACCGAT ATATGTTTCA 
    CCTTTGCCCA AAAAGTGGTG TGAACTGTCT TTCATGTATG GATGGATGGA 
    TCAGTTAAAC CCGTGTTCTC TGTTATGTGA TGCCCCCTCT TATGCAATTC 
    AGCATGGATA TGTTAAACCT GTGCTCGTAT GCCCTAAAAA TGGTGTACAC 
    TTTCTTAATG AATATATATC ACTGCAGTGG TTTGACGATC G

    Gene models with high sequence identity

    1. AT1G43190.2 [+] show detail - polypyrimidine tract-binding protein 3
      E-value: 8e-146; Score: 138.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther POLYPYRIMIDINE TRACT BINDING PROTEIN 1, 2 7.3e-105
    HMMPanther HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7.3e-105
    HMMPanther HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 3.5e-24
    HMMSmart RNA recognition motif, RNP-1 1.2e-12
    HMMSmart RNA recognition motif, RNP-1 1.5e-05
    HMMSmart RNA recognition motif, RNP-1 1.9e-08
    ProfileScan RNA recognition motif, RNP-1 13.208
    ProfileScan RNA recognition motif, RNP-1 11.247
    ProfileScan RNA recognition motif, RNP-1 10.36
    HMMPfam RNA recognition motif, RNP-1 1.4e-07
    HMMPfam RNA recognition motif, RNP-1 1.6e-07
    HMMPfam RNA recognition motif, RNP-1 8.5e-06
    superfamily RNA-binding domain, RBD 1.1e-19
    superfamily RNA-binding domain, RBD 8.3e-15
    superfamily RNA-binding domain, RBD 2.9e-10
    superfamily RNA-binding domain, RBD 6.5e-18
    Gene3D Nucleotide-binding, alpha-beta plait 5.1e-20
    Gene3D Nucleotide-binding, alpha-beta plait 9.9e-28
    Gene3D Nucleotide-binding, alpha-beta plait 5.6e-26
    Gene3D Nucleotide-binding, alpha-beta plait 2.4e-05

    See the detailed result >

    AT1G43190.2

    Model type
    Protein coding
    Short Description
    polypyrimidine tract-binding protein 3
    Computational Description
    polypyrimidine tract-binding protein 3 (PTB3); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: regulation of RNA splicing, regulation of translation; LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), HnRNP-L/PTB/hephaestus splicing factor (InterPro:IPR006536), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 (TAIR:AT3G01150.1); Has 2350 Blast hits to 1929 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 1455; Fungi - 41; Plants - 581; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR