K14112

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14112

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14112

Determination of introduced cDNA(s)

  • J013000I04 - Rice Full-length cDNAs - Original: J013000I04

    full reading [+] show sequence

    Nucleotide sequence: J013000I04 - full reading 
    GGATAGCCCA CACTCTCATC CACACTGCTC TTCCCCCCCG CGCGCCGGCC 
    ATGGCCACCG CGACGCTGCC CCTCCGCCTC CTCGCCTCCA AAACCCTAGC 
    CTTCCCCTCC GCCCCGTCCC TCCCGGCCTC GCGATGCTCC CTCCCCGTCG 
    CCGCGTCCGC GCCCCGCCGC TGCTGGCGGC TCCTCGCTTC CGCCGAGGAG 
    CCGGCGCCCG CACCCGTGGA GGCCGAGGCC GAGGCGGAGG TGGTAGAGGA 
    GGAGGAGGTT GAAGAAGAGG AGGCTGCGGT GCCGGAGCCT GTGGAGGCGC 
    AGATCGCAGC CGCGGGCGCC GGGAAGGACG CCGACATCTT CGCCGTTGTC 
    ATGATTGGGT CGAGACAGTA CATTGTGATG CCTGGAAGGT ATATATACAC 
    GCAGAGGCTG AAAGGCGCCA ATGTCAATGA TCAGATAATA TTAAACAAGG 
    TATTACTGGT ATCAACTAGA GACAAGGCTT ACATTGGCAT GCCAGTGGTG 
    ACCAATGCTG CTGTTCATGC AGTGGTTGAG GAACAGGGAC GGGATGATAA 
    AGTGATAGTC TTCAAATATA AGAAGAAGAA GAAGTACCAG AGGAAACTTG 
    GTCACAGACA GCCAAACACA AGGTTAAGAA TTACCGGCAT AAGTGGATAC 
    GAGGACTTCC CTGCTGACCC GATACTTGAG TATGTTCCAG CTTAAGAGCA 
    ATTGTAAGTT CTGTAGTTAC AAACAACTGG TAGTACATTA GAATACGAGT 
    GCTACCTTTT CTTGTCTGGA AGAACAGTTT TTGAACAAAA TTTGCTTTGT 
    TCATGTGTTC GAGTGCTGCC AGTCATCCAG TTGTTCCATC CTTTGTTTAT 
    TCCACCATCT GTTTTGTTCA TTCTGATATT GTGTATCCTA GCCAACTGTA 
    TTATTTTCAC TGTGCTTAAA AAAAGAGAGA GCATTTTACC

    Gene models with high sequence identity

    1. AT1G35680.1 [+] show detail - Ribosomal protein L21
      E-value: 4e-39; Score: 158.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L21, conserved site 0
    HMMPfam Ribosomal protein L21 1e-30
    HMMPanther Ribosomal protein L21 2.9e-26
    HAMAP Ribosomal protein L21 22.663
    HMMTigr Ribosomal protein L21 4e-33

    See the detailed result >

    AT1G35680.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L21
    Computational Description
    Ribosomal protein L21; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cold, translation; LOCATED IN: ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L21, conserved site (InterPro:IPR018258), Ribosomal protein L21 (InterPro:IPR001787); BEST Arabidopsis thaliana protein match is: Ribosomal protein L21 (TAIR:AT4G30930.1); Has 7103 Blast hits to 7101 proteins in 2544 species: Archae - 0; Bacteria - 5138; Metazoa - 96; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 1731 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR