K14118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14118

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14118

Determination of introduced cDNA(s)

  • J023081K10 - Rice Full-length cDNAs - Original: J023081K10

    full reading [+] show sequence

    Nucleotide sequence: J023081K10 - full reading
    GGGTGGAAGA GAGATTTCCC TCGCGCGCTT GTCGTTCGCC TTCTTCCCCT 
    TTGCGGATTT GAATCCGCTC GGGGGCGCTA TTACCTATTG GCGCCGCGGC
    GGCGGCGGCG GCGATTTGAG TCGGGATCCC GCTCGATGGC GGAGGGCTTC
    GGGCGGTGGG AGGCGGATCC GCTCTTCCCC GCCGCCGAGT GCGTGCAGGA
    CTCCGCCGAC AGGATGGAGG GTGTGTACCG CTTGCTCTTG CATGAAAGAA
    AACTGATACA AGATGATACC TCACATACAA AACGTCGTGT ATCAATGCAG
    TATGAGAGAG ATGTGTGCAC TGCTCTTGGA ACAACAAAGT GGCAGTTGGA
    GCAATTTGAG CGAGAAGTGA ATGCAGCGGC ATTGTCTAAT AAGTCAAATT
    CAAGGGAAAA TGCCATCTTG CAATTTAGGC AATTTATTAG AGCTATAGCG
    GAGCAAATTT CTCAGGTGGA AGATAGTTTG GAGAGTCTTA GGAATGATTC
    CATTAGAACA CCAAAACATT CATACTTGAC TGAACATGAT GGAGATGAAT
    TGGCATCTTT TCTTTCTGGT AGTAATAGAA AGGATAATCA TGTGATTTAT
    TCCACTGGAA CAGATGAAAT TGTTGAGCTC AAGCTTGATA GTGTTCCTGC
    AGTAAATGGT TATCATTCCA CCCAAGAACG TACATCATGT GAATTCAGAT
    ATTCAGGAGA AGATGTGGAA GGAGCAGCCA AGCCTCAATG TTCATGCGGG
    GAAAATGCAT GTGAAGGAGA TCATAATGGT AGCAGTATGC GTGGTTTGGA
    TTCTGATGAT TCAATAGGTA GGAAGCATCA TTTCAGGAGC AAACTGAGCA
    GGAAATACCA CAGTTTTATG CGGAATTTAT GGTTTACAAA TAGAGGACGT
    GAGAGTTTTA CAAAGAGGAG GAAAGATGGA GAAGTTATGG ATAGCTTGAG
    AAATGGAAGT ACATTACCTT CATTCAATCT ACCTCCAGCT GGAAGGGCTA
    TGTATTTCTG GCCTGAGCTT ATCAAGAGGA GATTAAGTAA ATTTAAATGC
    TCTACACATC ACAAGCATCT TCAAGTCCGT TTAGCAACAG TACTACTAAT
    TGCCCTTGCT GTACTTGGCT TGCTGGTTTT GCATGTGAGA TGACTGGGAG
    CAGTATCCGG TTTTGGTCCC TGTTGTGTAC GTGCCAATCG CCATGTTGCA
    CTGTACCAAT CAATCATTTT CATAGTTCCT GATGGGGGAG GATCCGTGTG
    CTATTGAGCA CCATTTGCTA TTTTATATTG CCATTCGAGG GAGACATAGG
    TTTGGCGTCA TTTGATTGCT CCTAAGTAGC CTGGACCAGC ACTGACATGA
    GCTGTGATTT TCCACAAATC CACATTTTTT GTTCAGAACT GCCACGTGAA
    TACACGATGT ATTGTATTGG CTTGTTTGTG ATACTTGCAC AATCAAGTAA
    TCAACCATTG TCTGATCAGT AAGATGACAA AGTCTTCTCC AGATTTTTAC
    GGTAGCAATC CTGTTAATAT ATTCCACCC

    Gene models with high sequence identity

    1. AT1G27700.1 [+] show detail - Syntaxin/t-SNARE family protein
      E-value: 2e-20; Score: 97.40

     

    InterPro Scan Digest

    Program Description E-value
    superfamily t-SNARE 4.3e-22
    Coil coiled-coil 0
    HMMPfam Syntaxin 6, N-terminal 1.4e-18

    See the detailed result >

    AT1G27700.1

    Model type
    Protein coding
    Short Description
    Syntaxin/t-SNARE family protein
    Computational Description
    Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT4G30240.1); Has 134 Blast hits to 133 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR