K14118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14118

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14118

Determination of introduced cDNA(s)

  • J023081K10 - Rice Full-length cDNAs - Original: J023081K10

    full reading [+] show sequence

    Nucleotide sequence: J023081K10 - full reading 
    GGGTGGAAGA GAGATTTCCC TCGCGCGCTT GTCGTTCGCC TTCTTCCCCT 
    TTGCGGATTT GAATCCGCTC GGGGGCGCTA TTACCTATTG GCGCCGCGGC 
    GGCGGCGGCG GCGATTTGAG TCGGGATCCC GCTCGATGGC GGAGGGCTTC 
    GGGCGGTGGG AGGCGGATCC GCTCTTCCCC GCCGCCGAGT GCGTGCAGGA 
    CTCCGCCGAC AGGATGGAGG GTGTGTACCG CTTGCTCTTG CATGAAAGAA 
    AACTGATACA AGATGATACC TCACATACAA AACGTCGTGT ATCAATGCAG 
    TATGAGAGAG ATGTGTGCAC TGCTCTTGGA ACAACAAAGT GGCAGTTGGA 
    GCAATTTGAG CGAGAAGTGA ATGCAGCGGC ATTGTCTAAT AAGTCAAATT 
    CAAGGGAAAA TGCCATCTTG CAATTTAGGC AATTTATTAG AGCTATAGCG 
    GAGCAAATTT CTCAGGTGGA AGATAGTTTG GAGAGTCTTA GGAATGATTC 
    CATTAGAACA CCAAAACATT CATACTTGAC TGAACATGAT GGAGATGAAT 
    TGGCATCTTT TCTTTCTGGT AGTAATAGAA AGGATAATCA TGTGATTTAT 
    TCCACTGGAA CAGATGAAAT TGTTGAGCTC AAGCTTGATA GTGTTCCTGC 
    AGTAAATGGT TATCATTCCA CCCAAGAACG TACATCATGT GAATTCAGAT 
    ATTCAGGAGA AGATGTGGAA GGAGCAGCCA AGCCTCAATG TTCATGCGGG 
    GAAAATGCAT GTGAAGGAGA TCATAATGGT AGCAGTATGC GTGGTTTGGA 
    TTCTGATGAT TCAATAGGTA GGAAGCATCA TTTCAGGAGC AAACTGAGCA 
    GGAAATACCA CAGTTTTATG CGGAATTTAT GGTTTACAAA TAGAGGACGT 
    GAGAGTTTTA CAAAGAGGAG GAAAGATGGA GAAGTTATGG ATAGCTTGAG 
    AAATGGAAGT ACATTACCTT CATTCAATCT ACCTCCAGCT GGAAGGGCTA 
    TGTATTTCTG GCCTGAGCTT ATCAAGAGGA GATTAAGTAA ATTTAAATGC 
    TCTACACATC ACAAGCATCT TCAAGTCCGT TTAGCAACAG TACTACTAAT 
    TGCCCTTGCT GTACTTGGCT TGCTGGTTTT GCATGTGAGA TGACTGGGAG 
    CAGTATCCGG TTTTGGTCCC TGTTGTGTAC GTGCCAATCG CCATGTTGCA 
    CTGTACCAAT CAATCATTTT CATAGTTCCT GATGGGGGAG GATCCGTGTG 
    CTATTGAGCA CCATTTGCTA TTTTATATTG CCATTCGAGG GAGACATAGG 
    TTTGGCGTCA TTTGATTGCT CCTAAGTAGC CTGGACCAGC ACTGACATGA 
    GCTGTGATTT TCCACAAATC CACATTTTTT GTTCAGAACT GCCACGTGAA 
    TACACGATGT ATTGTATTGG CTTGTTTGTG ATACTTGCAC AATCAAGTAA 
    TCAACCATTG TCTGATCAGT AAGATGACAA AGTCTTCTCC AGATTTTTAC 
    GGTAGCAATC CTGTTAATAT ATTCCACCC

    Gene models with high sequence identity

    1. AT1G27700.1 [+] show detail - Syntaxin/t-SNARE family protein
      E-value: 2e-20; Score: 97.40

     

    InterPro Scan Digest

    Program Description E-value
    superfamily t-SNARE 4.3e-22
    Coil coiled-coil 0
    HMMPfam Syntaxin 6, N-terminal 1.4e-18

    See the detailed result >

    AT1G27700.1

    Model type
    Protein coding
    Short Description
    Syntaxin/t-SNARE family protein
    Computational Description
    Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT4G30240.1); Has 134 Blast hits to 133 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR