K14123

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14123

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14123

Determination of introduced cDNA(s)

  • J013020D06 - Rice Full-length cDNAs - Original: J013020D06

    full reading [+] show sequence

    Nucleotide sequence: J013020D06 - full reading 
    GTCTCACAAA CCACGCAGGA AACCTCAGAA AATCACCGTA CGCGACGCGG 
    GCCCAAGAAA ACCCCGACAG AAACCGCGCA GCAGCAACAC CACCACCGGC 
    GTCGGAGATG GCGTTCCGGC TGAGCAACAG CCTGCTCGGG ATCCTGAACG 
    CGGTGACGTT CCTCCTGTCG GTGCCCGTGC TGGGCGGCGG CATCTGGCTG 
    GCGACGCGCG CCGACGGCAC GGAGTGCGAG CGCTACTTCT CGGCGCCGGT 
    GATCGCGTTC GGGGTGTTCC TCCTCCTCGT CTCCCTCGCG GGCCTCGTCG 
    GCGCCTGCTG CCGCGTCAAC TGCCTCCTCT GGTTCTACCT CGTCGCCATG 
    TTCGTCCTCA TCGTCGTCCT CTTCTGCTTC ACCGTCTTCG CCTTCGTCGT 
    CACCAACAAG GGCGCCGGCG AGGCCGTCTC CGGCAGAGGG TACAAGGAGT 
    ACAGGCTCGG CGACTACTCC AACTGGCTGC AGAAGCGGAT GGAGAACAGC 
    AAGAACTGGA ACAGGATCAG GAGCTGCCTC CAGGACTCCA AGGTCTGCAA 
    GAAACTGCAG GACAAGAACT GGGATCGGAC CCAGTTCTTC AAAGCCGACC 
    TCTCCCCGCT CGAGGTAACA ACAATTTAAC AGCAAGTTGT TCGCTTCAGT 
    TTCTGAATTT TTACCTGAAC AATTATACCG TTTCATCATC ATCAACAACA 
    AAACAGAGAT TAATTGCAGT TGGTTAGTCG TCGCGTACTT GTTCCAATTG 
    AAAAACAGTT GACATTTCAC GTGTTGTTCA ATCGTTTGTG AGGATAAGAA 
    GGAAACTGCT AGTGTCACTG TCAAAGAAAC AGAGTTTTGC GAGAGTATAT 
    ATCTTATCTA GGGGACGATG TTAACGTGTA CGGTTGCACC AGTAGTAAAC 
    CACGGGTAGT ATTTTTCTAA TGGAAATTAA TTCTGATAAG GTCATTTGGG 
    TGCATTATTA GCTACGCAAA CATCGTTTCT TTTTTATCTG TCATACTGCT 
    CACGTACTGT TTATAAGAGT ACCTGAAAAC AATAGCCTAA AATATGAATC 
    ATTCTCAAGA AATACAGATT CAATTGTCGC ATAGTCGAAT AATCAGAATA 
    ATTTTTTGAA AAAAAAACAT ATTTGGAATG CTTAGATTAG GAATCACTAG 
    GCATTTTATA CTGCTTCATG ACTCGTGGTG ATATTGTCAA CGGGAGGATT 
    AGACTATCTT GTGGTGGAGT TTCTTCAACT CAAAGCATGC CTTTTCTCTG 
    AACACTTCCC AAAGTTCTGA CCATCAAGGG GAAAAATTTA TTGGCGCCAT 
    CTTCAAAATT CAACGGTCCG GTGCCCTTTC ACCAAACTTT TAGGTCGCAA 
    AACTCAACTG CCTCACGAAA ATTTCCATTT GATAACTATC GGAACAGAGT 
    ATTCTATCGG AAGATGTCTG AAATTTTCAG TCCTGAAATA GTAGCACACG 
    TTTTCTAATA TCCACTTTAA ACCATTTGAT CTGTATGAGT AGGTTAAGAA 
    AGAATTATAT AACTGCAATA TTATGAAAAC CATGTTCCAT GAGAAATATA 
    ACTGAAAACT TTGAAGTAAT CATACAAAGT AGAATTTGCA CATAATTCTG 
    GTAAATTTTG GTGTGTGTTG ATACAATTCT GAACTGATCA AACCTCACAT 
    CTCTTTCCTT CTCATCTGCG TGCAGTCCGG ATGCTGCAAG CCACCCAGCA 
    GCTGCAACTT CCTCTACGTC AGCGGCACGA ACTGGACGAA GGTGCCCACC 
    AACTCGTCGG ACCCGGACTG CAACACGTGG GTCGACGACG GCACGCAGCT 
    GTGCTACAAC TGCCAGTCGT GCAAGGCCGG CGCGGTGGCG ACCCTGAAGC 
    GGGACTGGAA GCGCGTCGCC GTCGTCTGCA TCGTCTTCCT CGTCTTCATC 
    GTCATCGTCT ACTCCCTCGG CTGCTGCGCG TTCAGGAACA ACCGGAGGGA 
    CAACCGCGGC GCCTATCGCG GTGCCGCGTG GAAGGGCGGA TACGCCTGAT 
    TTCATTCGAT CGATCGATCG ATTTGCACGG CGTAATTGAT TGGCATGTTC 
    ATGCGATCAT GTCAGATATC TGTTCATAGG CTTAGCTCTG ATATTCTAGC 
    CCTGTACAGG CGAGATTATT CTGGGTTCTG ATCATCTGCT TGTTACTCTT 
    TGATCAGGAG TAGTAGGTTT CTGTATGCAG TTCTTTGATG CAACTTAGTT 
    GCACCCTACA TCATATTTGT ACTCGATCGG ATTTATTTCA TATATGTAAT 
    ATAGTATTCC TTTTTATTTG TTTTTC

    Gene models with high sequence identity

    1. AT2G23810.1 [+] show detail - tetraspanin8
      E-value: 3e-50; Score: 197.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Tetraspanin, conserved site 0
    FPrintScan Tetraspanin, subgroup 6.7e-07
    FPrintScan Tetraspanin, subgroup 6.7e-07
    FPrintScan Tetraspanin, subgroup 6.7e-07
    Coil coiled-coil 0
    HMMPfam Tetraspanin 6.9e-10
    HMMPfam Tetraspanin 4e-29
    HMMPanther TRANSMEMBRANE 4 SUPERFAMILY MEMBER 13 0.00081
    HMMPanther TETRASPANIN 0.00081

    See the detailed result >

    AT2G23810.1

    Model type
    Protein coding
    Short Description
    tetraspanin8
    Curator Summary
    Member of TETRASPANIN family
    Computational Description
    tetraspanin8 (TET8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, conserved site (InterPro:IPR018503), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin9 (TAIR:AT4G30430.1); Has 603 Blast hits to 600 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR