K14133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14133

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14133

Determination of introduced cDNA(s)

  • J023147I20 - Rice Full-length cDNAs - Original: J023147I20

    full reading [+] show sequence

    Nucleotide sequence: J023147I20 - full reading 
    GGGCAACCAA GAACGTACAC CAGCCAGCAG GAAATTAAAT AGTCATCGAC 
    CAATGGAGAA GCTGAAGAGC GAGCTATGGA TGACAGCGGT GGCCACCTGC 
    ATGTCGCTCT TGTTGTACCT CACCATCCTG AGACGGCGCC ACGCGAGCGG 
    CGGCAGATCA CTAGCATTGC CGCCGGGGCC AACGCCACTC CCGCTCATCG 
    GCAACCTACT CTGCCTTGGC GGCATCTTCC ACCAAACCCT CGCGAAACTG 
    GCGCGCGTCC ATGGCCCTGT CATGACGCTG AAGCTAGGCC TCACCACGGC 
    CGTGGTCGTG TCGTCGGCCG AGGCCGCGAG GGAGGCCTAC ACGAAGCACG 
    ACCAGCGGCT CGCCGCGCGG CCGGTCCCGG ACGCCTTCCG CGCGAACGGC 
    TTCTCCGAGC GGTCCATCGT GTTCTCGCCG AGCTCCGATC CGCAGTGGAA 
    GAACCTGCGG GGCATCCACG CGACGCACAT CTTCTCCCCT AGAGCCCTCG 
    CGGCGCTGCG CGGCATCCGC GAGCGCAAGG TGCGGGATAT CGTCGGCTAC 
    ATCCGCACGG TCGCCGGGGA GGAGATGTGT GTCCGCGAGG TCGTGCACAA 
    CGGCGTGCTC AACCTCATAT CCACCTCCTT CTTCTCCATG GACATGGCTG 
    ACGTGCGCTC GGAGTCGGCG CGCGGGCTAC GCGGGCTGAT AGAGGACATC 
    ATCGCAACCG TCGCGGGCCC CAACGTGTCC GACTTTTTCC CTTTCCTCCG 
    GCAGCTCGAC CTGCAGGGCT TGCGTCGACA AACGGGCAGC CATCTTGGCA 
    TCGTTTTCGG GTTGTTGGAC GACATAATCG ATCGCCGCAT GGCCGAAACC 
    CGTGACCACC CTGACAAGCA GCGGCACGGC GACTTCCTGG ACGCGCTCAT 
    CAGCCTCGCC TCCGCCGGCA AGATCCCACG CTACCACATC ACGTACCTTC 
    TGTTCGACGT CTTTGCGGCT GGCGCCGACA CGATGACGAC CACCGTGGAG 
    TGGGCGATGG CCGAGCTGCT TCGCAATCCC CGCGTGATGG CCAAGGTGCG 
    GGCGGAGGTG ACGGACGCGC TCGGCGGCAG GGAGAGCTTC GACGAGGGCG 
    ACGCGGCGAG CCTCACGTAC CTCCAGTGCG TGTTCAAGGA GGCGATGCGG 
    CTGCACCCCG TGGGCTCGAT ACTGGTCCCT CACCTGGCGG TGCAGGACGG 
    CGTCGAGATC GGTGGCTACG CCGTGCCCAA GGGCACCACG GTGATCTTCA 
    ACGCGTGGGC GATCATGCGC GACCCGGCGG CGTGGGAGAG CCCCGACCAA 
    TTCCTACCGG AGCGCTTCTT GCACAAGGAG GAGTCCTCAT CACCTCCGCT 
    GGAATTGCGA GGGAAAGACT ACGAGTACAT CCCGTTCGGG TCCGGCAGGA 
    GGTTGTGCCC CGGCCTGCCA CTGGCAGAGC GCGCCGTGCC CTTCATACTG 
    GCGTCCCTGC TGCACGCGTT CGAGTGGCGG CTTCCGGACG GCATGTCGCC 
    TGATGACATG GACATGACTG AGAAGTTTGC CACTGCTAAC GTGCTTGCTA 
    CCCCTTTGAA GGCTGTGCCA GTCGCGTCAC ACACTAGTTA GGGTGTGGAG 
    GAAAGTTTGG TTGAAATTGG AACGATATGA TGAAAAAGTT GG

    Gene models with high sequence identity

    1. AT2G45570.1 [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 2
      E-value: 2e-84; Score: 310.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cytochrome P450 3.7e-114
    HMMPfam Cytochrome P450 2e-94
    superfamily Cytochrome P450 2.6e-118
    PatternScan Cytochrome P450, conserved site 0
    FPrintScan Cytochrome P450, E-class, group I 1.1e-42
    FPrintScan Cytochrome P450, E-class, group I 1.1e-42
    FPrintScan Cytochrome P450, E-class, group I 1.1e-42
    FPrintScan Cytochrome P450, E-class, group I 1.1e-42
    FPrintScan Cytochrome P450, E-class, group I 1.1e-42
    FPrintScan Cytochrome P450, E-class, group I 1.1e-42
    FPrintScan Cytochrome P450, E-class, group I 1.1e-42
    FPrintScan Cytochrome P450, E-class, group I 1.1e-42
    FPrintScan Cytochrome P450, C-terminal 0.00000000095
    FPrintScan Cytochrome P450, C-terminal 0.00000000095
    FPrintScan Cytochrome P450, C-terminal 0.00000000095
    HMMPanther CYTOCHROME P450 SUBFAMILY 76C 8.8e-192
    HMMPanther Cytochrome P450 8.8e-192

    See the detailed result >

    AT2G45570.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 76, subfamily C, polypeptide 2
    Curator Summary
    member of CYP76C
    Computational Description
    "cytochrome P450, family 76, subfamily C, polypeptide 2" (CYP76C2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: stem, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 34313 Blast hits to 34043 proteins in 1718 species: Archae - 48; Bacteria - 4021; Metazoa - 12101; Fungi - 7308; Plants - 9587; Viruses - 3; Other Eukaryotes - 1245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR