K14220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14220

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14220

Determination of introduced cDNA(s)

  • J013067G18 - Rice Full-length cDNAs - Original: J013067G18

    full reading [+] show sequence

    Nucleotide sequence: J013067G18 - full reading
    GAGGGTAACC CACAGCTTAG CTAGCAAGCA GCAGCAAGCC AACATAGTAG 
    CTAGCACGTA CAAATGATCG CCATGACTCC TCTTGGACTA CTGCTAGTGC
    TTCTCGTCCT CTGTAGCTCC ATTCTTGTTG CCCATGGAGG AGACGCTGCA
    GCCGGCGCCT ATATGGTCAT AGCAACCAGC ACCATGAAAC CGAAAACTTT
    CTGCTCCGGC CACAAGGTTG CTCCAGGGGA CGTGCCGTCG CCGAACAGCA
    CTTGGGCACC GTTGCATCAC CTGTATGGGC CATGCTCGCC GGCGCCGTCG
    TCGGCCAACA GCACCGCCGC CGACGTCGCC GCTTCCATGG CCGACATGGT
    CGACGACGAC CAACGCCGCG CGGACTACAT CCAAAAGAGG CTCACCGGCG
    CCACCGACGA CAAGCAGCCG ATGGCCTTTT CGAGCAGAAC CTCGCAATAC
    GAGAAGAACG GCCAGTACGC CACTAATGGT GGCTTAGGCA GTGTGCCTCA
    CCTCAAAAGT TTATCAACGA CGGCGACGAC GAATTCGGCG CCGGATGGCA
    CGTCGGCGGT GACCCAGACG GTGATAATCG ACTCCGGCAG CGACGTTTCA
    TGGGTGCAAT GCAAGCCATG CCCCTTGCCG ATGTGCCACC GGCAACGGGA
    CCCCCTGTTC GACCCGGCCA TGTCGACCAC GTACGCCGCC GTCCCCTGCA
    CCTCCGCCGC CTGCGCGCAG CTCGGCCCCT ACCGCCGCGG CTGCTCCGCC
    AACGCGCAGT GCCAGTTCGG CATCAACTAC GGCGACGGGT CGACGGCGAC
    CGGGACGTAC AGCTTCGACG ACCTCACGCT GGGCCCCTAC GACGTCATCA
    GGGGCTTCCG CTTCGGCTGT GCGCATGCCG ATAGGGGGAG TGCGTTCGAC
    TACGACGTCG CCGGGTCACT GGCGCTCGGC GGCGGCTCGC AGTCGCTGGT
    GCAGCAGACG GCGACGCGGT ACGGCAGGGT CTTCTCCTAC TGCCTCCCGC
    CGACGGCGAG CTCCCTCGGC TTCCTCGTTC TCGGCGTGCC GCCGGAACGC
    GCCCAGCTCA TCCCGAGCTT CGTCTCCACG CCACTGCTGA GCAGCAGCAT
    GGCGCCCACG TTCTACAGGG TGCTCCTCCG CGCCATCATC GTGGCGGGGC
    GCCCACTCGC CGTGCCACCG GCCGTGTTTT CCGCCAGCTC GGTCATCGAC
    TCCTCCACGA TCATCTCGCG CCTGCCGCCG ACGGCGTACC AGGCGCTGCG
    CGCGGCGTTC AGGAGCGCCA TGACCATGTA CCGGGCGGCG CCGCCGGTGT
    CCATCCTCGA CACCTGCTAC GACTTCACCG GCGTCCGCAG CATCACCCTG
    CCCAGCATCG CCCTCGTCTT CGACGGCGGC GCCACCGTCA ACCTCGACGC
    CGCCGGGATC CTGTTAGGCA GCTGCCTCGC CTTCGCGCCC ACAGCCAGCG
    ACCGCATGCC CGGCTTCATC GGCAACGTGC AGCAGAAGAC GCTGGAGGTG
    GTGTACGACG TTCCCGCCAA GGCCATGCGA TTCAGGACCG CCGCCTGCTA
    AGTGCTAATT CAAATTTGCT TGCTTGCCAA ACTAGCGTAT TGTTAGCTTA
    TTATTCGAAT ATAAGCTAGC TAGTTGATGA AATAATTAGT CAAAGTGATT
    GTTGTTTATG TTTTGATGCC ATGTTTATCC TACATGGCGT ACTAGTAGAG
    CATCTATCTC TATGGAAAGG GATTAAAGTA GCTAGCTTAA TTGCAGCATT
    GTCTGCTAAA GTTTAGGCTA GCTACTAAAG CTCTTTTATT TATCTTGTCT
    GCAATAATTT GTTATCTTGA TGTGATTTCG GTCGTGTGAG ATTGTAATAT
    CGAGTTATGC ATCTCCATCT TGCATGTCAA GTGATGTACT ACTTTTTCCG

    Gene models with high sequence identity

    1. AT5G10770.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 2e-59; Score: 227.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidase aspartic, catalytic 6.8e-21
    Gene3D Peptidase aspartic, catalytic 3.9e-35
    HMMPfam Peptidase A1 0.0000000087
    superfamily Peptidase aspartic 6.1e-79
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 4.2e-67
    HMMPanther Peptidase A1 4.2e-67
    PatternScan Peptidase aspartic, active site 0

    See the detailed result >

    AT5G10770.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G10760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR