K14220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14220

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14220

Determination of introduced cDNA(s)

  • J013067G18 - Rice Full-length cDNAs - Original: J013067G18

    full reading [+] show sequence

    Nucleotide sequence: J013067G18 - full reading 
    GAGGGTAACC CACAGCTTAG CTAGCAAGCA GCAGCAAGCC AACATAGTAG 
    CTAGCACGTA CAAATGATCG CCATGACTCC TCTTGGACTA CTGCTAGTGC 
    TTCTCGTCCT CTGTAGCTCC ATTCTTGTTG CCCATGGAGG AGACGCTGCA 
    GCCGGCGCCT ATATGGTCAT AGCAACCAGC ACCATGAAAC CGAAAACTTT 
    CTGCTCCGGC CACAAGGTTG CTCCAGGGGA CGTGCCGTCG CCGAACAGCA 
    CTTGGGCACC GTTGCATCAC CTGTATGGGC CATGCTCGCC GGCGCCGTCG 
    TCGGCCAACA GCACCGCCGC CGACGTCGCC GCTTCCATGG CCGACATGGT 
    CGACGACGAC CAACGCCGCG CGGACTACAT CCAAAAGAGG CTCACCGGCG 
    CCACCGACGA CAAGCAGCCG ATGGCCTTTT CGAGCAGAAC CTCGCAATAC 
    GAGAAGAACG GCCAGTACGC CACTAATGGT GGCTTAGGCA GTGTGCCTCA 
    CCTCAAAAGT TTATCAACGA CGGCGACGAC GAATTCGGCG CCGGATGGCA 
    CGTCGGCGGT GACCCAGACG GTGATAATCG ACTCCGGCAG CGACGTTTCA 
    TGGGTGCAAT GCAAGCCATG CCCCTTGCCG ATGTGCCACC GGCAACGGGA 
    CCCCCTGTTC GACCCGGCCA TGTCGACCAC GTACGCCGCC GTCCCCTGCA 
    CCTCCGCCGC CTGCGCGCAG CTCGGCCCCT ACCGCCGCGG CTGCTCCGCC 
    AACGCGCAGT GCCAGTTCGG CATCAACTAC GGCGACGGGT CGACGGCGAC 
    CGGGACGTAC AGCTTCGACG ACCTCACGCT GGGCCCCTAC GACGTCATCA 
    GGGGCTTCCG CTTCGGCTGT GCGCATGCCG ATAGGGGGAG TGCGTTCGAC 
    TACGACGTCG CCGGGTCACT GGCGCTCGGC GGCGGCTCGC AGTCGCTGGT 
    GCAGCAGACG GCGACGCGGT ACGGCAGGGT CTTCTCCTAC TGCCTCCCGC 
    CGACGGCGAG CTCCCTCGGC TTCCTCGTTC TCGGCGTGCC GCCGGAACGC 
    GCCCAGCTCA TCCCGAGCTT CGTCTCCACG CCACTGCTGA GCAGCAGCAT 
    GGCGCCCACG TTCTACAGGG TGCTCCTCCG CGCCATCATC GTGGCGGGGC 
    GCCCACTCGC CGTGCCACCG GCCGTGTTTT CCGCCAGCTC GGTCATCGAC 
    TCCTCCACGA TCATCTCGCG CCTGCCGCCG ACGGCGTACC AGGCGCTGCG 
    CGCGGCGTTC AGGAGCGCCA TGACCATGTA CCGGGCGGCG CCGCCGGTGT 
    CCATCCTCGA CACCTGCTAC GACTTCACCG GCGTCCGCAG CATCACCCTG 
    CCCAGCATCG CCCTCGTCTT CGACGGCGGC GCCACCGTCA ACCTCGACGC 
    CGCCGGGATC CTGTTAGGCA GCTGCCTCGC CTTCGCGCCC ACAGCCAGCG 
    ACCGCATGCC CGGCTTCATC GGCAACGTGC AGCAGAAGAC GCTGGAGGTG 
    GTGTACGACG TTCCCGCCAA GGCCATGCGA TTCAGGACCG CCGCCTGCTA 
    AGTGCTAATT CAAATTTGCT TGCTTGCCAA ACTAGCGTAT TGTTAGCTTA 
    TTATTCGAAT ATAAGCTAGC TAGTTGATGA AATAATTAGT CAAAGTGATT 
    GTTGTTTATG TTTTGATGCC ATGTTTATCC TACATGGCGT ACTAGTAGAG 
    CATCTATCTC TATGGAAAGG GATTAAAGTA GCTAGCTTAA TTGCAGCATT 
    GTCTGCTAAA GTTTAGGCTA GCTACTAAAG CTCTTTTATT TATCTTGTCT 
    GCAATAATTT GTTATCTTGA TGTGATTTCG GTCGTGTGAG ATTGTAATAT 
    CGAGTTATGC ATCTCCATCT TGCATGTCAA GTGATGTACT ACTTTTTCCG

    Gene models with high sequence identity

    1. AT5G10770.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 2e-59; Score: 227.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidase aspartic, catalytic 6.8e-21
    Gene3D Peptidase aspartic, catalytic 3.9e-35
    HMMPfam Peptidase A1 8.7e-09
    superfamily Peptidase aspartic 6.1e-79
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 4.2e-67
    HMMPanther Peptidase A1 4.2e-67
    PatternScan Peptidase aspartic, active site 0

    See the detailed result >

    AT5G10770.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G10760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR