K14229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14229

Determination of introduced cDNA(s)

J013022N13 - Rice Full-length cDNAs - Original: J013022N13

full reading [+] show sequence

GGGATGCTTG GCCGGCAATA GAGAACAAAC TCTCCACCTT CTAACCGCTT 
CCTTGCTTGC TGCCATAAGC CGCTGAGGTC ACCACGGGCG GCCGACCACC 
ACCGCTGCCG ACCCATGTCG CCGTTCGCGG CCGCCCGGCT GACCATGCAT 
GACCCTCGTC GGCCTCCTCG CGTAGGTCAC TGCTGGCCTC CTTGCACCGT 
GGGCCACAGC CTCACGCCGC GTCAGTCGTG CCTCGCCAGC AATGGCCATG 
CATCGCTCCA GCTAGATCCA TGTGCCGCCG GCCGCTGCCT TGCACACCAC 
CGTCCGCCAC CTCACACGCC GTCAGTTGCG TGGCCTCCAA CACCTGCCGA 
CGAGCCGTTG TTGTCGCCGG CTCTGACCAG ATCTGGCAGG AGACACCAGA 
TCCGGCCACG CGCCACCGGT CGCTAGAGCC CACTCCCAAA GTGCCACCGG 
CTCTCCCTCT TTGCCTCCCG GTGCTGCGGC GGCTGTCCCC GAGGCCATGG 
GATCAGGCCT CAGACCTCCG GGGGGAGAGG GAAGGCCCCG CTGCCGCTGT 
CCTTGCAGTT ACATGGTTTT CCGGCGGCTT GCTCAGGCGG CGGTGAGGTG 
GAGAAGGGAG GAGGTGGTGG GTGGCAGCAG GGGAGGGAGA CATCGCCCAT 
GTCGCCCAAT CCTAGAGCGA CGCAGGGGCG CAAATGGATG GTCTCTCCTC 
TGTGCTCTTC TTCCCAGCAT ATCTCAATAA TTCAGTTGCT GGGGAGTACC 
ACATGCATCA GATGCCGTGT TGGCACATTG TAAGAGAGCA AAGGAGCCTT 
GAGGTGGTGA TTCAAATTGT GGTGCAAATT ACACGTGGAG TTGAAGCATA 
TGCATGGAGT AGCCATGGGC TAGCTAGCTA AGCTGCTTAC CAGTGGATGG 
TAACATTGTG AGCTACATGA TTGACGACCT TGACTAGGAC ATTATCGCCT 
TCTCTTGCAT ACAGGGTTGG CCCCGGGAAC TTGCCATTGA CAGTGAGGAT 
AGGCTTGGTT GAGCAAAGCC GTGTCATGTT CCGCATGACC ACCTGCACAA 
GACACAGAAA AGACAGACAA AACCGTGTTA TCATGCGGCA AAGTTTGATG 
ACGATATATC CTCACATTGA ACTTGTAATG CCGGGTGATG GCGTGGGCGC 
TGAGAGCCTG AAGCAGGAAG CAGGCGGCCA TGAGGAGCAG GGAGAGCCGG 
CGTGACTCCG GCAGGACGGC CATGTTTGCT GCGTGACCAG CGGCAGGGGA 
AGGAGAACTA AGAGCTGGTG AGAGTGCAGT GCAGTGCATG GAAATACGGA 
GGTAACGAAT GCTTATAATG GCGCACTGGC TAGATAGGAG GGAATGGGCG 
GTGTTGGGTT TTTAGCTGCC ATGTCGTTTT AAAATTTAGG TGGGGAAGCC 
TTGCTTAACA AGGCTAGGAA CCTTCTGATT CATTTACTTT CACGACCATT 
CGCCTAAATT TTACCAGCCC AATCCCAGCT GCTGCTGCTT CTGTACATGC 
CTGATAGTGC ATTCCTTCAG TACCACATAA AGCTACCTAC CCGATTACTC 
CACTATGCTG CCGCACCCAG TTTCTGGCTG TTCATACTTG GTGAAACCTT 
CACTTAATTA GCTATACATA CACTCTTGTT TGATGCATAC TCGTACAAAT 
TAATATTCTT GCTGCGTTCA TATATATATA TGTCCGTCCT TTTCC

Gene models with high sequence identity

AT2G38080.1 [+] show detail - Laccase/Diphenol oxidase family protein
E-value: 2e-15; Score: 21.60

InterPro Scan Digest

Program	Description	E-value
superfamily	Cupredoxin	1.6e-10
Gene3D	Cupredoxin	2.7e-09
HMMPfam	Multicopper oxidase, type 3	2e-14

See the detailed result >

AT2G38080.1

Model type: Protein coding
Short Description: Laccase/Diphenol oxidase family protein
Curator Summary: Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
Computational Description: IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
Link: InterPro Scan - TAIR