K14230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14230

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14230

Determination of introduced cDNA(s)

J033122O03 - Rice Full-length cDNAs - Original: J033122O03

full reading [+] show sequence

GCACTTGCTT TCATCTTCAA TGGATAAAAC TGTACGGTTG TGGCACGTGT 
CAAGCACTTA CTGTTTGAAA ACCTTCTCCC ACAGTGACTA TGTGACTTGC 
ATCCAGTTCA ATCCTGTTAA TGATAAATAC TTCATTAGTG GTTCCCTGGA 
TAAAAAGGTT CGAATTTGGA GTATACAAGA ACGCAAAATT GTTGACTGGA 
TTGATCTGCA TGAAATGATC ACAGCTGCCT GTTATACCCC TGATGGACAG 
GGTGCACTCG TTGGCTCCCA CAAGGGCAAG TGCCATGTCT ACGATATTTC 
TGATAATATG CTTAAGCACA AGAAACAGAT TGATCTACAT ATTAAGAAAA 
GGAAATCTAG CCAGAAGAAA ATCACAGGAA TTCAGTTTGT TCCAGGGAGT 
TCTTCAAAGG TCATCATCAC ATCTGCAGAT TCACGAATTC GAGTTATTGA 
CAGTTTTGAA CTAGTTTGCA AATTTAAAGG CTTTCGTAAC ACCAACAGCC 
AAATTTCTGC TTGTTCAGCT GTGAAAGGGA GATATCTTAT CTCTGCAAGT 
GAGGATGCCC ATGTATATAT GTGGAGATGT AATGATGATT CCGAACCAAA 
CACAAAGAAG GGCATTGTTT CTATCACAAA TACCCATGAA CACTTCCACT 
GCGAGGGTGT GACAGTTGCT GTTTCTTGGC CTTGTGCCAG CAGCACAATG 
ACATCTAGAG AATGGCCTGA GAATGGCCTG TCTGGATCTG AGCTTGATAA 
AGATCAGGAG ATGCCTGATG CTCAGCACCA GAGCAACATC ATCAGAAACA 
CCAACCCAAA TCATAATGGT GATACATCTG CGACTTGGTC TGAAGAACTC 
ATGACACCAA CAAAACAGAG CCCGCGGTCT AGTGCCAGCC ATCCTATGGA 
GGGAGATCAA GCTCCGAGTC ATTCGGCCTG GGGCTTGGTG ATTGTCACAG 
CAGGCCATGA GGGTCATATC AGAACATTTC AGAACTTCGG CTTTCCCGTT 
AGAGTATAGC ATATGGACCT GGATGCTGAG TCATCCTGCA GGAGTGTAGT 
TTTGTGTATA GAATACACGG AAATATATAT TCAATGAGAT GCACAGCATT 
GGGTTGGGGG ATTGGATTTG GTTGCTCCTT GGTGCGCCTG CTTCAGAATT 
TGGAATCTTC GACTAACACA TGGTCAGTAC TCAGGTACTT GTGGTATGAC 
ATTCATTTTA GATATTACCT CAAATTGTAC ATGAAAGTGA ATCCCTAGAA 
AGAGTAATGC TGTCCGCTGG TTGGAGTGAC ATCTTTCGCC CTCATCTTCA 
ACCTTTGCTC CACTTTTTTT TAATACTCCC TACTATGTAT TCTTGTAAGG 
GGAAAAAAAT CAGTGCTACA GAAAAGAGAT GCAAAAGAAA ATTACGTATT 
GTGGGCAGTG GGCGTGTGGT GAAATTCTTT ACATTG

Gene models with high sequence identity

AT3G15470.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 2e-101; Score: 366.00

InterPro Scan Digest

Program	Description	E-value
superfamily	WD40 repeat-like-containing domain	3.3e-38
HMMPfam	WD40 repeat, subgroup	0.041
HMMPfam	WD40 repeat, subgroup	0.000000018
HMMPfam	WD40 repeat, subgroup	1.5
HMMPfam	WD40 repeat, subgroup	0.15
Gene3D	WD40/YVTN repeat-like-containing domain	3.1e-34
HMMSmart	WD40 repeat	0.00000000072
HMMSmart	WD40 repeat	1.2
HMMSmart	WD40 repeat	8
HMMSmart	WD40 repeat	0.51
ProfileScan	WD40 repeat 2	10.442
ProfileScan	WD40 repeat 2	12.58
ProfileScan	WD40-repeat-containing domain	13.896
FPrintScan	G-protein beta WD-40 repeat, region	0.000016
FPrintScan	G-protein beta WD-40 repeat, region	0.000016
FPrintScan	G-protein beta WD-40 repeat, region	0.000016
HMMPanther	WD REPEAT DOMAIN 44	9.5e-94

See the detailed result >

AT3G15470.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G54200.1); Has 35932 Blast hits to 22007 proteins in 749 species: Archae - 56; Bacteria - 5680; Metazoa - 13723; Fungi - 7656; Plants - 4267; Viruses - 6; Other Eukaryotes - 4544 (source: NCBI BLink).
Link: InterPro Scan - TAIR