K14232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14232

Determination of introduced cDNA(s)

  • J033066C05 - Rice Full-length cDNAs - Original: J033066C05

    full reading [+] show sequence

    Nucleotide sequence: J033066C05 - full reading 
    GGGCCACAGC CGCCACACCC AACCTCCCGC CGCCGTCGCC AGCCAGCCAG 
    CCATGGGGAG CCGGCTGGGT CGCCGCGTGA TCCACTTCGC CAACCTCCCC 
    CTCAAGCTCA TGCTCCCTCC CGCGCCGCTC TCCTCCGTCC AGGAGTTCGC 
    CGTCAAGACC GTCCCCTCCG CCTCCAAGGT CGACATCCGC CGCTGCCTCG 
    AGTCCATGTA CGGCCTCTCC GTCGCCGAGG TCCGCACCCT CAACATGGAG 
    GGCAAGAAGC TGCGCCGGGG CCCCTTCCTC GCCGCCAAGC CCGACTACAA 
    GAAGGCCTAC GTCACCCTCC GCGCCCCGCT CCCCGTCTCC CCCGACCTCT 
    TCCCCATTGG GCTTGTCCTC GGCGAGAGGG AGCGCAAGGC CAGCGCCGCC 
    GCCGCCAGGA GGAAGGCGGT GGAGGGCGCC GAGGTGGAAG GGGAGGGCAA 
    GGGGAAGCAC TGGATGGAGG ATGAGAAGGT GGGCTTCTCC AGGGCCGGCC 
    GCGGCAAGGT GGTGTACGGC AACCCCGGGA GGCTGGGGAA GAAGAGGAAT 
    GGAGGTACCA AGGTGAAAGA CAGAGCCGGA GAGGAAGTGG GGAAGTTCCC 
    ATGGAGCGGG ACGCGTCTTG CTACCGAGAA GAAACCTGCT AGGAAACAGC 
    AGTATGCCCC CAAGAAGAAG GGCATAGTCC TGAAGCAGAA GTCATGGAAG 
    GGATCCGTGC ATCGGCAACC AAAGAAGAAG GTGGAAGCTT AGAACCTTGA 
    GTCGCTGCAT TGCGATCATG AGTGCACTGT GCCACAGAGC AGGACGCGAG 
    CGGTAGATCC ATGAATCACA ATGCCAGATC AGTCTTGTTT TTCATTCACA 
    GAATAAAGAG CAATATTTTG GCATATGTAT GGCTTTGGTT ACTTTGATAT 
    CTCAGGCTTG GTTTTCTGAC ACATGAGGCC AGGAAGGTGA ATGGTAGTCA 
    AGTTTGTGCC AACCTGTTAC TGATGTCCTT AGATTTCTTT TGAGATGTCT 
    ATTTGTCATC AATCACAACT GAGTATGTAC AACTGATGCC TCCTCATTTT 
    TTTTTTTGTT CTTGTCAATT ACATATACCT GTTATTCCCG TGGATTGGTA 
    TCATATGCTG TTTCTGAGGC CC

    Gene models with high sequence identity

    1. AT4G39880.1 [+] show detail - Ribosomal protein L23/L15e family protein
      E-value: 1e-29; Score: 127.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L25/L23 4.1e-13
    superfamily Ribosomal protein L23/L15e, core 4.1e-13
    Gene3D Nucleotide-binding, alpha-beta plait 1.3e-07
    FPrintScan PRICHEXTENSN 1.2e-09
    FPrintScan PRICHEXTENSN 1.2e-09
    FPrintScan PRICHEXTENSN 1.2e-09
    FPrintScan PRICHEXTENSN 1.2e-09

    See the detailed result >

    AT4G39880.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L23/L15e family protein
    Computational Description
    Ribosomal protein L23/L15e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L15e, core (InterPro:IPR012678), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); Has 3109 Blast hits to 3109 proteins in 1190 species: Archae - 0; Bacteria - 2436; Metazoa - 5; Fungi - 1; Plants - 57; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR