K14233

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14233

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14233

Determination of introduced cDNA(s)

  • J023004C21 - Rice Full-length cDNAs - Original: J023004C21

    full reading [+] show sequence

    Nucleotide sequence: J023004C21 - full reading 
    GGCCTCCTCC ACCACCTTGG CCAGTGGTTC AGCAAGAGGA GGAAGAAGGC 
    GCTGTTCGAC GCGCTGGAGA AGGTCAAATC CGAGCTGATG ACGCTGGGGT 
    TCATCTCGTT GCTGCTCAGT GTCACGGGGA GGTACATATC GCGCATCTGC 
    ATCCCGGTGG GAGCCGCGGA CACCATGCTT CCCTGCAGCC TCCGGAGGAG 
    TTCTTCAGAG CAGGAGGTGC CCGGTGGTGG TGGCCATGGC CGGCGACACC 
    TATCTGGAGA TCCAACCAAT TTTAAATGCG CCAAAGGTAT GGTGTCGCTT 
    GTTTCAGCTG ATGGGCTTCA CCAGCTGCAT ATCTTCGTGT TCTTCCTGGC 
    AGTCTTTCAT GTCGCATTCA GTGCTATTAC AATGTCTCTG GGTAGAGCAA 
    AGACACGTAT ATGGAAGGAG TGGGAGAAGG AGACTTGCTC CCTTACCTAC 
    GAGTTTTCAT ATGACCCCTC AAAGTTCAGG CTTACTCATC AAACGTCTTT 
    TGTGAGGCAA CATGCAAGCT GTTGGAGCAA AAGTACTATT CTGCTCTATT 
    TTGTGAGCTT CTTTAGGCAG TTCTTCAGAT CTGTTAGAAG GACAGACTAC 
    CTGACTTTGA GGCACGGATT CATTGCTGCT CATTTATCTC TAGGGACTAG 
    GTTCAATTTT CGGAAATACA TCAAAAGGTC ACTGGAGGAC GATTTTAAGA 
    CAGTTGTTGG CATTAGTGCA CCCTTATGGG CTTCTGCGTT GGCCATTATG 
    CTCTTCAATG TTCATGGATG GCATAACTTG TTCTGGTTCT CTACAATCCC 
    CCTTGTAGTA ACTTTAGCAG TTGGAACAAA GCTGCAGGCT ATAATTGCAA 
    TGATGGCTGT TGAAATTAAA GAGAGGCATA CAGTAATTCA AGGAATGCCG 
    GTGGTGAAAC TCAGTGATGA ACATTTTTGG TTCAGGAAGC CACGTCTGGT 
    TCTTCATCTT ATCCATTTCG CGTCATTTCA GAATGCATTT GAAATTACAT 
    ACTTCTTTTG GATTTGGTAC GAATTCGGGT TGAGATCCTG CTTCCATGAC 
    AACTTTGAGC TTATCATCGC CAGAGTCTGC CTTGGGGTTG TCGTTCAATT 
    CATGTGCAGC TATATCACAC TTCCACTCTA TGCTCTCGTA TCTCAGATGG 
    GTTCACAGAT GAAGAGAACG ATTTTCGACG AGCAGACGGC GAAGGCCCTG 
    AAGAAATGGC ACAAGGCAGC AGTGGTGAAG AAGAAGCAGC AGAAGGGGTC 
    ATCCCATGAG CCAGGTTCAG AGACACCGGG CACGGAGACG ACGACGACGA 
    CGGCGACGGC AACGGAGGAG AGCCAGCGAG AACGCGACGC CGCGGCCATG 
    CCGGTGCGCC ACCTCCACCG CTACAAGACC ATCGCCCACG TCGGCGCGAC 
    GGGGACGCTG TCCGACTCGG ACTGCTCCGA CACGGACACG CCGTTCGCGT 
    CGCCGACGAG GCTCCTGATA CCGCCGACAA AGCAGCGGAG CCTCGACGCC 
    GGGAGGGCGG AGGTGCGCGT GGACGTCGAC TCGACGCCGA CGCCGACACC 
    ACCGGAGCGC CATGACAGCT TCTCCTTCCC GAGGTTGCCT GCTCACAATT 
    TGCAGCAGAA ATGACCAAAT GATCATCCAT CCTAAGTTCC TAACCATCAG 
    TAGTAGTAGT AGCAGCATCA ACTATACATG TAATTGAAAT TGATGGTGGT 
    GACAAGTGTG TGTAGAGCAG TGGAGTCTGA AACTTGGTGC TGTCCCATTT 
    GGTCCAGCTC CTACTCTGTG GGTGGAGCGG AGCTGAGAAA ATGCCATTTC 
    ACGTACTTCC TCCGTTTCAC AATGTAAGTA ATTGTAACAT TTCTCACATT 
    TAAATTGATG TTAATGAATC TATATAGATA TATATGTCTA GATTCATTAA 
    CATCAATATG AATGTGGGAA ATACTAGAAT GACTTATATT GTGAAACGGA 
    TGAAGTATAA TTTCCGGTTT GGCAGCTGTT TGGCAGCTCC ACTCTAATAC 
    TTTATGTTAT CCATGATTTT GAAAGTGTTT GGTACAGAGC CACAGATATA 
    AGAATATCCG AGCATGAGTT ATGCC

    Gene models with high sequence identity

    1. AT5G65970.1 [+] show detail - Seven transmembrane MLO family protein
      E-value: 2e-123; Score: 440.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Dihydroorotase, conserved site 0
    HMMPfam Mlo-related protein 6e-193

    See the detailed result >

    AT5G65970.1

    Model type
    Protein coding
    Short Description
    Seven transmembrane MLO family protein
    Curator Summary
    A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s
    Computational Description
    MILDEW RESISTANCE LOCUS O 10 (MLO10); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT2G17430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR