K14243

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14243

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14243

Determination of introduced cDNA(s)

  • J033044I12 - Rice Full-length cDNAs - Original: J033044I12

    full reading [+] show sequence

    Nucleotide sequence: J033044I12 - full reading
    TGAGGGAATG AAAGATGGCC TTTCTCTCTC CTTCGCTCTC ATCAGCTCGA 
    GCCCCGACAG CAAGTGTGAG CTACTGAACT CGAGACCCTC CTGTCGCGCG
    GCGCGGCGCG GCGAGAGTGG CCTTTTGATC CGACGAAGCT ACCTTTTATC
    AGTCTAAGAC CCTGCCAATG TCCATTTGGA GATAGGATGT CGGAACAGCA
    GGATAGTACT AGTAAAAGCT CTAGCTCAAG CATCAGCAGC AGTACACAGG
    AGAGCGAGGA GGAGGTATCT ATAACAATAG GTAGCCTCCT CGCCCAAGCA
    AAGAACAACA GTGGGCATAG TCTTGGAAGG CGCCTCTCTC AATTGGGTTC
    AATCCCGCAC ACTCCTCGAG TTAATGGAAA AATCCCTAAT CTTGATAATG
    CAACTTTGGA TCATGAAAGA TTGTCGGAAA GGTTGGGAAA TTATGGTTTG
    GCCGAGTTTC AAATAGAGGG TGATGGAAAT TGTCAGTTCC GAGCTTTGGC
    AGACCAGATA TTTCGCAACC CCGATTATCA CAAACATGTG AGAAAGTTAG
    TCATGAAACA GCTAAAGGAA TTCAGAAAAC AGTATGAAAG CTATGTACCT
    ATGGAATATA AAGTCTACTT GAAGAAAATG AAAAGATCTG GGGAATGGGG
    GGATCATCTG ACTTTACAAG CAGCTGCAGA CAGGTTTGGT GCCAAAATTT
    GTTTGCTGAC GTCATTCAGA GACACCTGCC TAATTGAGAT AGTCCCCAGG
    GATGTGACTC CCACAAGGGA GTTGTGGCTA AGCTTCTGGT GTGAAGTGCA
    CTACAATTCC TTGTACGCAA CTGACGATCT CCTAACCCGC AAAACCAAGA
    AGAAGCATTG GTTGTTCTAG GGCGTCTCAC CTCGAGCTTC CTTGAGCTTC
    TGCTGCTGCA GTTCTTTTCC CTTCAAGTTA GCAGCATCTG TGGTGCTTAC
    TAGTTTTACT ACCATGGCAA CCCAGCCGGC ACTGCAATTC CCTAACCTGA
    AAGAAGAGCT TATGTACAGT TTAACTTTCA GTAGTATGTT TCGCAAGGTA
    CAAACCTAGA ACTGTGCAAC TTTCAGATCC ATGAGTCCCA TGTTCTACCC
    GGCGAGATGT AGTTTTGTTT TTGCATAGTA TATTGTGATC TATCCAGGTG
    CTTGCTTTGT AAAATCATCA TGTGAGCTGG CTAGATTTTT TACCATATAT
    AAGCTTCAGT TGAATTCTCG AATTCCG

    Gene models with high sequence identity

    1. AT3G22260.1 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 5e-71; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cysteine proteinases 2.9e-35
    HMMPfam Ovarian tumour, otubain 1.8e-18
    ProfileScan Ovarian tumour, otubain 14.319
    HMMPanther OTU DOMAIN CONTAINING PROTEIN 2.1e-45

    See the detailed result >

    AT3G22260.1

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G02070.1); Has 790 Blast hits to 782 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 319; Fungi - 70; Plants - 256; Viruses - 12; Other Eukaryotes - 133 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR