K14250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14250

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14250

Determination of introduced cDNA(s)

  • J013041C14 - Rice Full-length cDNAs - Original: J013041C14

    full reading [+] show sequence

    Nucleotide sequence: J013041C14 - full reading 
    GATTCTTCTC GCACATTCGC ACGCTCCTGC ATCTCCATCC GTCGCCACCA 
    CCTCCACCGC CTCCGCCTCC GCCCCCGCCC CCTCTTCCGC CGCCACCAAT 
    GTCTTCGGCG GCCGGTGAAC CCTCCTCCTC CTCCGCCGCC GCCGCCGCCA 
    TCTCTTGCTC CTCCTCCAAC GACGACGAGA AGCCACCGCC GTCTCTGGAG 
    GGGAAGGAGC TGCGGCGAGT CGAGGAAGAG GAGCCCGCCG CCGCCGCGCG 
    CCCCGAGAAG CTCACGGAGG GGTCCTCGCG CGCCGCTGAG GCTGAGGAGG 
    AGGAGGAGGT GGTGGAGGAT GAGGAGGACG ATGACGAGGA AGATGAGGGG 
    AAGGTGGCGG AGGCCATCGA CCTCGGCCCC AGGGTCAGCA TCAAGGAGCA 
    GCTCGAGATG GACAAGGAGG ATGAGAGCCT TCGGAGATGG AAGGAGCAGC 
    TTCTTGGCAG CGTCGATTTG AACTCAGTCG GAGAGTCACT GGAGCCAGAC 
    GTGAGGATCA CAAGCCTGTG CATCCTGTCA CCGGGGCGGC CGGACGTCCT 
    TCTGCCGCTG CCCGTGGAGC CGAGCAACTC CAAGGAACCA TGGTTCACCC 
    TCAAGGAAGG CAGCACGTAC AGGCTCAAGT TCACCTTCTC TGTCAGCAGC 
    AACATCGTCT CTGGCCTCCG CTACACCAAC ACCGTATGGA AGGCCGGCAT 
    CCGAGTGGAC AAAACCAAGG AGATGCTTGG CACGTTCAGC CCTCAGCTGG 
    AGCCGTACAC TTACGTGACG CCTGAGGAGA CGACCCCCTC GGGAGTATTT 
    GCTCGGGGAT CATACTCTGC AAAAACAAAG TTCGTCGATG ATGACCGGAA 
    GTGCTACCTG GAGATCAACT ACACCTTCGA CATCCGCCGG GACTGGCCCT 
    GCAAGTCCTG AGAAGCTGGA CACCAAGCAG AAGAGGATGG CAGGCATCTG 
    TGAAAGAGGC ATGTTCAGGC TGCCCTGTCC CTGTCTGCTC TGATCTTTTC 
    AGAGTGTAAG GATGATTGGT TACAGCGATT GTTTGTAGAC ACATAGTAGA 
    TTCATTTGTC AGGTCAGCAT TGTTAATCTG TGCCTGTCGC TCGAGCTCAG 
    TTGTAAACTT GGAATGCTGG GTGTTCAGAG AATTGTACTA CTAGCTCCGT 
    TTTCAAGCAA CGGTTGCAGG TTGAATTGCC TCGTTGTGTA CAACGATAGG 
    CAAATGGC

    Gene models with high sequence identity

    1. AT3G07880.1 [+] show detail - Immunoglobulin E-set superfamily protein
      E-value: 5e-67; Score: 251.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RHO protein GDP dissociation inhibitor 1.4e-80
    Gene3D RHO protein GDP dissociation inhibitor 1.4e-61
    superfamily Immunoglobulin E-set 2.2e-75
    Coil coiled-coil 0
    HMMPanther RHO GUANINE DISSOCIATION INHIBITOR-RELATED 3.1e-114
    HMMPanther RHO protein GDP dissociation inhibitor 3.1e-114
    FPrintScan RHO protein GDP dissociation inhibitor 9.7e-11
    FPrintScan RHO protein GDP dissociation inhibitor 9.7e-11
    FPrintScan RHO protein GDP dissociation inhibitor 9.7e-11
    FPrintScan RHO protein GDP dissociation inhibitor 9.7e-11
    FPrintScan RHO protein GDP dissociation inhibitor 9.7e-11

    See the detailed result >

    AT3G07880.1

    Model type
    Protein coding
    Short Description
    Immunoglobulin E-set superfamily protein
    Computational Description
    SUPERCENTIPEDE1 (SCN1); FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: root epidermal cell differentiation, cell tip growth; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1); Has 660 Blast hits to 660 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 162; Plants - 120; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR