K14331

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14331

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14331

Determination of introduced cDNA(s)

  • J013170B16 - Rice Full-length cDNAs - Original: J013170B16

    full reading [+] show sequence

    Nucleotide sequence: J013170B16 - full reading
    TTGGGATTGG TTTCTTTCTG CTCTGTTGCA GCTCCGTTGT CTATGGTAGG 
    TACCTTTTGG ACGGAGGTTT TGCATTTGCC TAGTTACTAG TAACTGCATA
    ATTAACAGGA GGAGTACTAC CAAGAATGCA TACTAATTAT TCGCGTGATA
    TTTTGTACGT TTAAGTTTAG AGAACCCGGG ATTCGACCAG ACCATCAGTC
    CACTCTCTCT CTCTCTCTGC TTCTTCTTGT GTTGTGCTTG TGCCTCCTCA
    TTATTAATAT CTGTACTCCA TATTCTACTA CTGCATGCTG GAGTACTCTG
    GTCATGGAGC ATTTGACATT TGCATCCACC CCGATGAGCT GAGCTGCTCC
    ATTAATATAC TATTCCTCCT CAATTAGTCA TTCACTACAT ACATACAGCA
    AAATCCTAGC ACCACGACGG CGGCCGCATT TGTATGAAAT CGATAGATCG
    TCTCTCTCTC TCTCTCATCC AACCAACCAC GCACAGCGAC TCAGCGAGCG
    AGGAACAACT AGAGCTTGAT GCCAGTGTCG CGGATGATGA TGGAGTCGAA
    TACGATGGCC AAGGAGATGG CCGTGCGGCA CCACCTCCTT CCGGGGTCTC
    CTCGCCGCCG CACCGCACAC AACCTCTCAT CTTCCTCCCT CCGCAAAAGC
    TCCGACGCCT CCCTCCTCCA CAAGGTTCCC TGCGCCGCCC TCCGCTCCCT
    CCTCGCCAAT CTCAACGACG TCCTCCTCAC CACCAGGCTC TTCCTCCTCT
    TCCCCGCCGT CCTCCTCGCC ATCGCCGCCA CTTACCTCCA CTTCGGACAG
    GTGTGGGTGT TTGTGCTTAG CTTAATCGGC CTCGTTCCTC TTGCTGAGCG
    ACTCAGCTTC CTCACCGAGC AGATTGCATT TTACACCGGT CCTACTGTGG
    GAGGACTACT GAACGCGACA TTTGGGAACG TGACGGAGGT GATAATCGCG
    CTGTTGGCGC TGCGAGAAGG AAAGATTGAG GTGGTGAAAT GCTCCCTGCT
    GGGATCCATC CTCTCCAACC TGCTGCTTGT CCTCGGCACC TCCCTCTTCC
    TCGCCGGCAT CGCCAACCTC CGCGCCCACC AGCCGTACGA CACCAAGCAA
    GCTCACGTCA ACACCGCCCT CCTCATGCTC GCCGTCCTCT GCCACTCCCT
    GCCGCTCATG CTCAGGTACG CCGTCACCTC CGGCGACCAC GCCATCGTCT
    CCGGCGACGC CGCCCTCCAC CTGTCGCGTG CCTGCAGCAT CCTCATGCTC
    ATCGCCTACC TGGCCTACCT CTTCTTCCAA CTCAACACGC ATCGCCAGCT
    GTTTGAGCCC CAACAGGTTG AGGATGATGA CGACGATGAT TTAGTGATCG
    CTCAAGATGA TGAGCCAGTA CTGGGATTCT CGAGTGCCAT GATTTGGCTG
    GCTCTCATGA CTCTCCTGAC TGCGCTCTTG TCAGGGTATG TTGTGAGCAC
    AATTGAGGCG GCCTCAGAAT CATGGGAACT ATCAGTGAGC TTCATTAGCA
    TCATCTTGCT TCCCATCGTT GGGAACGCAG CAGAGCATGC CGGTGCCGTC
    ATATTTGCTC TCAAGAACAA GATGGATATT ACTCTCGGAG TGTCTTTGGG
    CTCTGCCACA CAGATCTCCA TGTTTGTGGT TCCAGTGAGT GTGATTGTAG
    CCTGGACTAT GGGAATCCCA ATGGATCTTG ATTTCAACCT GCTGGAGACT
    GGCTCTCTGT TTCTAGCAAT ATTAGTGACA GCCTTCACCC TCCAGGAGGG
    AGAATCACAT TATCTGAAGG GATTGATTCT TGTCCTGTGC TACGCTGTCA
    TCAGCGTGTG CTTTTTCGTT ATAAGACGGC GTTCTGCAGG AGGGACGGAC
    GGTGTTCACC ATCTGGATGT GATTGTGTAG CAAATTACTA ACAGGCAGAC
    CGCAGAAGCA GAAACGTACG TACATGCGCC TAACATATAT ATGGAGTCCG
    TACAGTACGT GCTAGCTACG GAGTACTCCT GTACACTACT GTACTACTGC
    TTGCACAAGA GAAGAGGATC GAGTACCGTA GCTAGCACAG GCGGCGGAGA
    CGAGACGATC TGCTTGCTTG AGGAGGCAGC CGATCGAAGC CGGACTGGGC
    GGAGATCGAT GCATGGATCC AGTTTGTTTA GACTGACGGA CGATAGAGGA
    TGATACCACG ACCCAACCAT CCGTCCCTGC AATTGGCTGG TTTGGTCATT
    CAAATAGGGA ATCACAATTG GGTTTTAATG GGTTGCTTTA GTTTAGGTCG
    TTTTGGAATG GTTTGTTTAT ATTTATCTTT TTCAAAGGAG TTTGTTTAGG
    TTTATCGAAC TACTAGAATA TACATCCATC TTAAGATTAT TACATTTTAA
    AATAAAGATA TATAGTATG

    Gene models with high sequence identity

    1. AT3G51860.1 [+] show detail - cation exchanger 3
      E-value: 2e-118; Score: 423.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Calcium/proton exchanger 4e-168
    HMMTigr Calcium/proton exchanger superfamily 9.2e-94
    HMMPfam Sodium/calcium exchanger membrane region 2e-21
    HMMPfam Sodium/calcium exchanger membrane region 5.8e-18

    See the detailed result >

    AT3G51860.1

    Model type
    Protein coding
    Short Description
    cation exchanger 3
    Computational Description
    cation exchanger 3 (CAX3); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 1 (TAIR:AT2G38170.1); Has 3567 Blast hits to 3405 proteins in 1022 species: Archae - 24; Bacteria - 2167; Metazoa - 14; Fungi - 725; Plants - 252; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR