K14339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14339

Determination of introduced cDNA(s)

  • J033055I05 - Rice Full-length cDNAs - Original: J033055I05

    full reading [+] show sequence

    Nucleotide sequence: J033055I05 - full reading 
    GGCTGCCGCC ATCGAAACCG CTCTTCTTCC CTGCTGCGGG GTGAGGGATG 
    GAGCGCGTGA GGAGGGCTTC GCACGCCGGC TCTTGGTACA CCAACAATGC 
    CAGGAAACTG GATGAGGAAC TTGATGGTTG GCTGAGGGCT GCTGGTCTCA 
    CCAAGTCCCC TGATGTGAGG GCAGTAATTG CGCCCCATGC TGGCTATTCA 
    TACTCAGGGC GGTGTGCGGC TTATGCTTTT GGCAACATTG ATCCAACTAA 
    CATTTCTCGG GTCTTCCTGT TAGGCCCTTC ACATCACTAC TATACTCCAA 
    AATGTGCATT AACAAGAGCT ACTATTTATA GCACCCCAAT TGGGGATTTG 
    CCAGTAGACC ATGAAGTAAT TGAGGAACTC AACGCTACAG GAAAATTTGA 
    TTTTATGGAC CTTAGTGTGG ATGAAGCTGA ACATAGCATG GAAATGCATT 
    TACCCTATCT TTCTAAAGTT TTTCAGGGAC ATAACGTAAA AGTTGTCCCT 
    ATCCTTGTTG GTGCCCTTAA CTCCCAAAAT GAAGCCATGT ATGGGCAGTT 
    GCTCTCTAAA TATCTTGACG ATCCGAAGAA CTTCTTTTCT ATCTCCTCAG 
    ATTTCTGCCA CTGGGGAACC CGGTTTAGTT ACACATACTA CGATAAGAGC 
    CATGGTGCTA TACATAAATC GATAGAGGCC TTGGACCGCA TGGGCATGGA 
    GATAATAGAG ACTGGTAATC CAGATGCATT CAAGCAGTAC CTGCAAGAGT 
    ATGAGAATAC CATATGTGGA CGCCACCCCA TCAGCGTTTT CCTCAGCATG 
    CTGAAACATT GTTTGACAAA GATCAAGATC GGATTTGTTC GGTATGAGCA 
    GTCAAGCCAG TGCAAGAGCA TGAGGGACAG CAGCGTGAGC TACGCTTCTG 
    CGGCAGCCAA GGTGGATACT CCAGCCGAAG AAGAGAAGGA TTAGATTGTG 
    GATTTTGCAC GGATCACTTG TACAACCCCC GCCTGCAGCT AGCATGATCG 
    GTTTGCAATC CATTGTATCT GCCTGCCAAA CTCTATAAAG TAATAACAGG 
    TTCTTGTTGA AGACCGATCG TTGCAGCAAG GTGAACACCA GGTAACAACA 
    ATGAATAAGG AATACTCATA TTTCTGGATA CATTTACCCT AGCATCTACG 
    AGCTGAATAT TCTTTTTGGG GTTTGAGGCC TGCTTGATAG CGGTGGGGTT 
    TTTTTTTTTT CGATATAGAT TCTACAGCAG CAAGCTCAAC AAGGCAACAA 
    CTATACCACT AGAAAAAAAA ATACTAGCAC AAACAACTAG TTACTCGCGG 
    TAACAGTAAG CAAAAATCAG AAGAATATGG ATAGCATGAT TTCACTGAGA 
    TGCGAAGCTG ATGTATTTCT CGAAATTCAA ATCTTTAAGG GCATTATACC 
    TCTTTGTTGA GTAGCTCATA AAGAGATTGC TTGGTC

    Gene models with high sequence identity

    1. AT2G25280.1 [+] show detail - CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (Inter...
      E-value: 5e-130; Score: 461.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UPF0103/Mediator of ErbB2-driven cell motility (Memo), related 2e-128
    HMMPfam UPF0103/Mediator of ErbB2-driven cell motility (Memo), related 6.4e-83

    See the detailed result >

    AT2G25280.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR