K14344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14344

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14344

Determination of introduced cDNA(s)

J033132E09 - Rice Full-length cDNAs - Original: J033132E09

full reading [+] show sequence

GGACTTCGCC GCCGCCACAG CAGCCGCCAC GGTTCCCTTC CCTTCGCCGT 
CGTCGACCAC CGGAGTCCGG AGTGGCGGCG GCGGGATGTT CTAGAAGAAG 
GATGCATGGT CCGGAGTCCG GGGCAACCTT TGCCGCAGAG GTCGGCGTCA 
GCAGATGCGT GGGAGGATTT CACATCCGCG CGTAAGCACT AGGGCATTTC 
TTGATTGGGA TGGTGTTTGA TCTTGAGAAT ATTCAGGCGT TATATCTGAC 
GGAAACAAGG GGGGAAAGGG TAAACATTAG GCAATAATAC CAAGTTTTTC 
TTGCACAAGG CAGATAAGAC AAACACAGGA ATTGTACACA GGCATTAGTT 
CAAGAGCCCC ACTAATGAAG GAAATTAAAC CCATGACAGT TGGGAAGGGA 
GACAAACAAG CAAACATACT AAATATTGGT GCTACAATGC AAGCCAACAA 
TTGGTGCATG GAAGAGGAGT AAGAGCCCCT TCAGCATCTT TATTCGATAC 
TAGATACTAG ATACAAGTTG AAGTACTTCA GAAGTAGCTG GAGAAGCAAC 
GTCAACAGGC AATTCAAAGT GGAAAAGAAA TAGCAATGTT AAGCATCCTT 
TTCCTCCAGG GCACACAATG AGTTGAAGCC ATGGCAGTTT ATTCAGTTTG 
CTTCATCCGT AGGCACCAGT CCTTGTGCAT GATTAGTTCC CTGCTGCTGG 
AATGTGCTTC AGACTGGGGT CATTGGGGTG TGCACTGATG TCATGCAGAA 
TCACTCCAAT CTTCTCCGTG TCACAGTCAC CGTGAAGCTG GAGCTCCCTG 
AAGCTTAGGA GGTGATCGAT CCCGACAAGA GAATCCATTA TGGTGAAACG 
CCAGACCAAC CTCTCGAGCC TAGGAGCTGC TCCCTCATCG AACCTGATGC 
TGACAATGTC TGAGTTCTCG ATCAAAAGAA ACTGGAGGTT TCTGAATTCC 
CTTCCGGAGA TGGTGAGGTT GCCTGGGATG TATGACCTGT GTCGGAGCCT 
GAGATAGCGC AAGCCCACGA GCTTGCCCAG GACATGGATA GCACTCTCTG 
TCAGGGAGGT ATCACGCAGA GTAACCTTGG TAAGTTTGTG GAGATGTTCT 
ATCCACAGAG GCAATCCACT TCTGATGCCA GAGATTGTCA GGCTCTCGAG 
AAACCTTGGG AGTGTGGCAT CCATCATGCT CATGTCAAAG CCCTTGCTTC 
CATCATCGGC AGAAGATGAT CTGATTTGGA CGGACAGAGA GCGTAGGCAC 
TTGTGCAACG TGCCGATTAC ATGAAGCAAA CAATCAGAAC CATCCTTATC 
AGCATCATGG AAGACCACAC CTAATTTCCT CAGCTTCAGT AGCTGGCTAA 
CAGCAGTCAA CTCCTTTCCA CCATGTGAAA CTTCAATATG GGATAGTATC 
TCCATGTTTC TCATCTTCCC AATTCGGTGG GGAATGTGGA CGGCAGAGAA 
TGATTCCTGT TGCCTGACGA TGTCTTCACT TGGACAGACA GTATGGCCTG 
AGAGCAAATG CTTGAGCCTA GGGAGCACTA AAGATTTCCT GGGGAAGACA 
CTGACATTCG TCTGCCTGAT GTCTAGCGTT TCCAAGTGGA TCAGCTTCTC 
CATTTCCTTC GGCAGTTCGG TGACATCTGT ATCCCGCAGG CTCAAATACT 
TGAGCGAATA TATGCCACAG ATGTTCTTCA GGTGGCGCCT CTTCAAACCT 
TTGCAGCTAT CCAAATCTAG CACTTTGAGC AGACACAGCA AAGAAGACGA 
TGGCAGGGAC TTGAGAAAGG TAAGAATATC ATCGATAGGT TCAGACAGAG 
ATATATGCAA CTTTGTGCTG AAGCGGATTG AAAGATGGCG AGCCAGTTCT 
CGTGGTGCCA AAACCGTGAC AACAAAAGTA GTATCATATC CTCCGGATAC 
CAGATCAGTA ATGACATCAT GAACCAAGTC AAGTACCGTG CAGGTCTTGA 
CCTTGCCTGA AGCATCAATG TCGCTTGGAC AGAGAAGCAG CCTGCCAACA 
AGGGAATCAA AACAGTTATC AGCTTGTTCT AGTGCATTCA TTTCTTGTCC 
GTCAGTGATG AGGCCTTCAA CAATCCATCG TCTTACTAAG CTGGTCCTCC 
TGATTTTGTA GCCAGGTGGG AAAATAGATA GATACAGCAT GCAACTCCGA 
TACTTATTAG GCATATCAAA GTAGCATAAC TCTACCATCT TCTTAGGCCA 
GTAATCATGC AGTGATCCTC TATTGCCTAG TGCATCGTAC ACTTGGCTTG 
AAGAACCACT CTCATTATAA TACAGAAACC GAAGGAGCAT CTTCATAAAG 
TAGATTTGAG GTTCAAGATA GATCAACATG CATGGTAGAA TTTTCCGTAG 
CCAACCTTCC CTTTCATGTT TAAGCAGAGA TATAGCTCTA CTGAGGAAGA 
AGTTGAGAAC ATGACCGGAG CTATCTGGAT TGAAGGTTTT ATACGGAGAG 
AAAGTCTGGG CCACTTTATC ATCATTATCT GTTGTGACTA TAATGGCACT 
ACCAGCAGGA CAATCATCTG GGAAAGCAAG CTTTATATGA TCCCAGATCA 
ATTTGTCACG GACATCGTGA AGAATAACAA GGAAGATTTT ACCTCTCAAA 
TAGCACCGAA TCTTCTCCAC CAGCTCCTCC TCGTTCCAGC CATCCATTTC 
ACTCCTGAAC TTGTTCAGAG GGAGAACAAC CTGACATAGT ATATCTTTTA 
ATATCTGAAC GTGAGATTGA GCTCCGTTGA CAGTGATCCA GGCCTTGCAG 
TCAAATAAGA TGGCGACGGA GGAGTCCTGG TAAACTCTTT CAGCAATGAT 
CTTACCGGCT TCCACGCCGA CTCCCACAAT AGTGCTCTTC TTCAGGTTGG 
CTGGTGGTTC AGCGAAAGCA AAAGAACGTC TCCAAGCAGT TTCATCTCCA 
TGTTCACCAT CGTCATCCTG TTCCCACAAT TGACTTAAGG TGTCAAAGCG 
GGGGCAAATA TCATACGTTT TCCGCCGGTC GTTCACCTCA CTCAGTCGGA 
CCTTGATGTC TTGGATCCGC GAGGCCAGCC GGTGGCAGAC GGAAAGGTTC 
CGGACAAGAC GGGAGACTCG CTGGAAGTGG CTGAGGAGGC CCTTGGATGG 
CGGCCGGCCG GCTGCGACAC ACTGCGCATA CTGCTCAACG CAGTCCTGAC 
AGTCGTGGGC GAGTTCCACC GCCTGCTTGA TCCATGGCGC GCACTTGTTG 
TAGTGGTGGC GGTCGAGGGT GCTGGCCTGC TGTTTCAGGA GCAGCAGGAG 
GAAGGCGTCC ATCATCTCCA TCTCGTCCTT GATGAACTGC ATGTCGCGGC 
GGACGCGGCC AAGCAGCCGT GCCTTGTCAG CGAGCACGGT GCTGATGCGG 
CCCAGCAGCG TGTCGAGGAC GCCCTTGACT GAGCCGATCA CGAGCTGATC 
TGCCATCGCC GGCGGCCACA AAGATCGATT TGCATTTGCT GGTTGGTTTC 
AGTGGGTGGT GATCACTCCA AGCAAGCTAA GGGAGTGAAG CTAAATAGCA 
GGAGTACTTG GCTAGCTAGC GCTGCACCTG CACGTGGAGT GGCTCGCATT 
CGTTGTATGG CTGACCCATC CTCCGCTGAC CTTAATTGTG GATTAGTTTT 
AACATGGAAC GCGTGGTTGA CTTTCTCC

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 1e-32; Score: 139.00

InterPro Scan Digest

Program	Description	E-value
superfamily	L domain-like	2.8e-27
HMMPanther	RAS SUPPRESSOR PROTEIN 1, RSU1	0.00012
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	0.00012
Gene3D	no description	0.000013
HMMPfam	NB-ARC	2.7e-16

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR