K14350

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14350

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14350

Determination of introduced cDNA(s)

  • J023045B03 - Rice Full-length cDNAs - Original: J023045B03

    full reading [+] show sequence

    Nucleotide sequence: J023045B03 - full reading 
    GAGTTTTATG TTCCCATTCC ATTCCACCAT GCGGTCCACG CCCCCTCGAT 
    TCTCTCTGCT TTCCGCGCTG CTGCTGACCG ACGACGGCCG CGCCCCTGTC 
    CCGGTCTCCT CCTCGTCCCT CCTCCCCGCC TCTCCAGTCT TCCAGAACAT 
    CGCCACCGCC ACCGCCGCCG CCGCCGCCGC TCGCCGGCCA CGACCGCCCC 
    CGGCCCATCT ACACCTCCGC CGGATCTCGC AGCCGCGCTC CCCCCATTGG 
    AGGGAGATCC GTTCCAGCGC GTGGGATTTA ATTTCAACAC ATGACTGGTG 
    AAATGTTTGC TTGATGATGT CCGGACATGA TTTCAGTATT GTTCATAATG 
    CAGTTGGCAT CTCATGCCAC TCAAGCGGAT GAAGCAACAG AGCTTGCTTC 
    CAGCTGTGAT TGTGCAGAAG TGCCAGCTTC ACAGCAGATA GTTTCTGAAT 
    CAAGTACAGC AGGAAGCTCC ACAGAGCATC TAGTTTCATG TGAAATCAAG 
    CCACTGGGTG TTGATGAAGA CATTGAAACT ATTGATGCTA ACGAAGAAAC 
    CCACCTTGTC ATTCAAGACT GTCCACAATG CCGGATTTGC CTTGATAATG 
    AAGGTGATGA CTTGATTGCA CCTTGTCATT GCAAGGGCAC ACAGAAATAC 
    GTGCATCGAT CCTGTCTTGA TAACTGGAGA TCAACAAAGG AAGGTTTTGC 
    CTTTTCACAT TGCACTGAGT GTCGGGCTGC CTTCTTACTT CGTGCAAATG 
    TTCCTCCAGA TCGATGGTGG TTGAGATTGA AGTTTCAACT TCTGGTTGTT 
    AGAGATCACA CGTTGATTTT TTTTATTGTA CAACTGGTTG TTGCTTTATT 
    GGGTATGCTA GTATACAGAT TTTATGGAGA TGAACTACGA GAAATGTTTG 
    GTTATGAAGA GCATCCATAT GCTTTTTATG CAATGGCAAT ATTGGCTATT 
    GTTTTGGTTG GTTTGCTGTA TGGATTCTTC ATAGCTATAA TATGTGGGCA 
    GAGGATCACA GAACGGCATT ACCATGTTCT TGCAAAGCAA GAGTTAACCA 
    AGGAGTATAT TGTAGAGGAT CTTGAAGGAA CTGATGGAGT TCCTGACCTT 
    GATCCTAATC ATGTTACAGA GCTGAGGATT CTGGGGCTAT ATTGAGTACT 
    GGAGATATCA TCAATTCATC AGGTAGGAAA TTTAGCACTT GTGCTATAAA 
    ATGTCTGTTT AGATCTTTTT ATGTGGTTGC TACTTCCTCA GAGATCTCTC 
    TTTGCATCCT ACAAATGTAG CAGAGCTCTT GATTAACAAT AGCCACTTAA 
    AATGATAAAA TGTGGCATCA AGCATCTCAC ACATCCATAT TTTGCCCCAG 
    ACATATGTTT TTGGTCATTT TCTACAGTTT TGTTTTGTAC TAATGTGCAA 
    TGCATGTGAT GCCAAAGTAT TTCTGGATAA TATTTTATGA TCACTGAGGT 
    TTTGCTACTG CGTATGGTCA GTTGAATGCC ACAAATAGTT CTTTCACTGT 
    GATAAGATGA AGAAACTTGT ACAGAAGAGC CCCGTTTTTT AATCTTTTTT 
    TTTTAACCTA GGAGTGCTTA TAGCTGACTT ATATACTAGT GATCCAAGAT 
    GAATCATTGT AACTCAGTTA GATCTTCCAC ATTTTCTGAA AACAGTTGGA 
    TTCAGTCCTT GAGAGTTGAT AAACCATGCT TGATGTGGCT TCTGATGAAC 
    AGATTCAGAC ACACCTCAAA ATCTTAGTTT TTTTTTTTGT TTCATGGGAA 
    CAACACTTGG CTAATTCAAG TTACAATACA AAGATTTCCC ACCACAAGGG 
    ACGTACCAAC TTGATTTGAA TATGCCATGA GCCATGAAGA GTGCATACAT 
    TTTGATGGAG AAGCTGTAGA TATATATATT CATAGCTTCA CCTTCCTATT 
    GAGATCCAAA ACTAAAGTAA CTGCATTGCA ATAACCAAAT CCATCAATTG 
    TTGTTGTGCT GGCATAAATC AGGCTAATTT CTGATTAATC TTTTGTACTA 
    TTTGCAATGC TATTACTTGG CTTAAGAAAG AGCAAATAAA AAATGTGATT 
    AAAAGACCTG ATGAGATGAT GAGAAAACGG GAAAAAATTA TAGGAGAAGA 
    AAAACAATGT AGTCG

    Gene models with high sequence identity

    1. AT1G50440.3 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 8e-93; Score: 338.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-CH-type 1.9e-16
    Gene3D no description 0.0000000000062
    HMMPfam Zinc finger, C3HC4 RING-type 0.00000038
    ProfileScan Zinc finger, RING-CH-type 20.137
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 0.000000000031
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 0.000000000031

    See the detailed result >

    AT1G50440.3

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G11020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR