K14401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14401

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14401

Determination of introduced cDNA(s)

  • J023094O16 - Rice Full-length cDNAs - Original: J023094O16

    full reading [+] show sequence

    Nucleotide sequence: J023094O16 - full reading
    GTGCGGTGGG GGGCATTTCA TCGAACACCA TTCGCGCATC GCTCTCCCCG 
    AGCGAACCGC ATTCGTTACG TTACGTTACG TGCGAGATGA ATCAACTTGT
    CAGGTACAAA CACAACCGGA GAATTTGCTT TTGTTTATAC TGGAGTTATA
    CGATGTGATC CTGATCCAGG CTCAGTTCGA CCTAGCCCCT GCTTATCTTT
    GCTTGTGGGT CGTTGTCGCC GTCTTTGGTT ACGCTAGGAG AAGCATCTCT
    CTTTCTTGCG TAGGTAATCA ACTATCTTAA TTTTTCTTTT GTGTCTTGAT
    TATGTGCAAC ACCGAGTGAT GCGAATGGGA TGTGTTCCTT TCGATGTTTT
    TTCTATATAA GCTCTGAAAC TTGGACTTTT GCAACAAATG GTTCGGGTGC
    AGATGAGCTG TTTGACGAAA TGCCCAGGAG ATTCCTGCGT GCGTTGCATG
    CCCAGCGGCG GTTTGACTCT ATTTTTCCTT TAGTATGGTG TCTGCTCTCT
    GGTGATCTAA TGTACCATTT TCTCTTAACC TTGTTTTACC CAATCTTAAT
    GCAAAGATGC ATAAAGAGAA CTCTGCATAT TCCTGTTTTC TCTTAACCTT
    GTTTCAGAGA ACCTTGTTTT CTCTGAACTC TGCAAAAGAT TTTCTGCATA
    TTCCTGAAAA AAGGAGAACT CTGCTCCGGT GCTTTTAACT AGACTTATAA
    AGGCTTTGGC ATAGGATTCC TGTATTGGTT GATGCAAAAT CTGCTGGTAA
    CAGTCAGCTA AATTCGCTTA AAAAGTACAC TTCTTTGGGT CTTCTTGCTA
    GTGCAGGTAG AGAAGCACCA TGGCCTTCCT GGTTTCTTAG GTGGTAAACA
    GGCAAAGAAA GTAAAGCACC AAGTGGCGCC ATTGCTGCAA TGAAATCAAA
    TTATTATTAG CAAGTGGATG AAAGGAAAAG AATACACAGC CTGGAAGAGC
    TTTCAACTTG AATCCCCTTG CAATTGTGTA ACACTACTTG TCCTTTTCAC
    ATTGCATCAT CGTTGAAACA TTTGGATTTT AATACAAAAA TCATTGTGGG
    TAGATTTTGC CTCAAAAAGT GCTTTCATAC TGTTTTAATT TTGTCAGGTT
    TTTCAGACGT TTTGCAATAG AGAATGTCAA TGTCCATTGT GACAAAGGCA
    GTTGGTGGCA AGAAAGGGAG GAGAATCTAT AACAGCTCTC TTCTGCAATC
    TGCATTGCCC TCTCTGTTCT CATCAGGTTT TAGCCACACT GCTTCAATAT
    CTCTTTCCAT CTTCCGTATT TAAGTGATCG GCACTCAGCA GCTCTGTGAG
    ATATCTCTTC TGGGATCTGC AGTTTCAAGC ATCTCCCATA GGAGAGATCC
    AGTGGGAATC CGTAGGTTCT AGCACTATGG GCACAGTTTT GGATGCTCTC
    GCTTGGAAAT TCTTGGAAAA GCTGGGTCAA CTTATTGAGG ATGAGGTTAT
    CATGACATTA AGTGTGAAAA GGGGTATTGA GAGCCTGAAG AAAAATCTGG
    AATTCTTCAA CGCTGTTCAT GAGGATGCTG AGGCTCTGGC CATGGAGGAT
    CCAGGGATAG ATTCATGGTG GAAGAACATG AGAGATGTTA TGTTTGATGT
    CGATGACATC GTAGATCTTT TCATGGTTCA TTCACAGAAG CCCTTGCTGC
    CACCAAGGCC GGTATGTTGC AATCAGCCCT TGTTCTCTAG CTTTGCAAAG
    TTTTCATTTG ATCACATGAT TGCCAAAAGA ATTGATAATA TAAATGAAAA
    GTTTGAAGAA ATTAAAATGA ACAAAGAGAT GTTTGGCTTG GAGAGAACCA
    ACGGGCAACA AATCCAGATA ACAATTGTTG ACAGAAGTCA GACATCTCCT
    GTAGATGAAC TTGAGGTGGT TGGAGAAGAT ATCAGAAGGG CTATTGATGA
    CATCGTCAAA ATGATTGTTA GTAGTAACTA CAATGAAAGC AGGTCAACTG
    TTTTTGGGAT CCAGGGGATG GGAGGCATCG GTAAGACAAC ATTAGCTCAA
    AAGATATACA ATGAACAGAG GATAAGGGAG AAATTCCAAG TTCATATATG
    GTTGTGCATT TCTCAGAATT ACACAGAGAC CAGTTTGTTA AAACAGGCAA
    TCAGAATGGC TGGAGGAATT TGTGATCAGC TGGAGACTAA GACTGAGCTT
    CTACCGCTTC TAGTGGACAC TATTAGAGGG AAGAGTGTTT TTCTTGTGCT
    GGATGATGTT TGGAAATCTG ATGTATGGAT TGATCTTCTT CGTTTGCCTT
    TCTTGAGAGG TTTGAATTCT CATATCCTTG TGACCTCAAG AAACCTGGAT
    GTTTTGGTTG AAATGCATGC AACTTATACC CACAAGGTAA ACAAAATGAA
    TGATTGCGAT GGCCTAGAAC TGCTGATGAA GATGTCATTA GGGCCATACG
    GGCAAAGCAG AGAATTCAGT GGTGTTGGAT ATCAAATTGT CAAAAAGTGT
    GATGGCCTTC CTCTTGCCAT CAAAGTTGTT GCAGGTGTTC TATCTACTAA
    AAGAACAAGG GCAGAATGGG AGAGTATCCG AGATAGCAAG TGGTCCGTTC
    ATGGACTTCC CAGAGAACTA GGAGGCCCTC TGTACTTAAG CTACAGCAAC
    TTACCCCCTG AACTTAAACA ATGCTTTCTC TGGTGTGCTT TGTTGCCGTC
    AAATTTTGTG ATACGTCGTG ATGCTGTCGC TTACTGGTGG GTTGCTGAAG
    GTTTCGTGAC GGAAGTGCAT GGGTACTCAA TACATGAGGT TGCTGAAGAG
    TACTACCATG AGCTAATCAG AAGGAATCTT CTGCAGCCAC GACCAGAGTT
    TGTAGACAAA GGCGAGTCAA CAATGCATGA TCTATTGAGG TCACTTGGTC
    AATTTTTGAC AAAGGATCAC TCCATATTCA TGAACATGGA ATATAGCAAA
    GCCTTACCAA ATCTACGCCA CTTACGTATC AGCAATGATG TAGAAGAAAT
    ACCTGCTATA GAAAAGCAAA AGTGCTTGAG GAGCCTCCTA GTTTTTGATA
    ACAAAAACTT CATGAAAATT AATAAGGACA TTTTCAGAGA ACTCAAGCAT
    ATCCGTGTCT TAGTTCTCAG TGGAACAAGC ATCCAAATCA TACCAGAGTC
    AGTGGGAAAC TTCTTGTTAC TGAGGCTTCT AGATCTAAGC TAT

    Gene models with high sequence identity

    1. AT3G46730.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 8e-56; Score: 216.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 2.9e-10
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-09
    HMMPfam NB-ARC 2.2e-58
    FPrintScan Disease resistance protein 4.4e-19
    FPrintScan Disease resistance protein 4.4e-19
    FPrintScan Disease resistance protein 4.4e-19
    FPrintScan Disease resistance protein 4.4e-19
    Coil coiled-coil 0

    See the detailed result >

    AT3G46730.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Computational Description
    NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT3G46530.1); Has 14658 Blast hits to 14197 proteins in 483 species: Archae - 6; Bacteria - 489; Metazoa - 440; Fungi - 102; Plants - 13534; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR