K14401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14401

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14401

Determination of introduced cDNA(s)

  • J023094O16 - Rice Full-length cDNAs - Original: J023094O16

    full reading [+] show sequence

    Nucleotide sequence: J023094O16 - full reading 
    GTGCGGTGGG GGGCATTTCA TCGAACACCA TTCGCGCATC GCTCTCCCCG 
    AGCGAACCGC ATTCGTTACG TTACGTTACG TGCGAGATGA ATCAACTTGT 
    CAGGTACAAA CACAACCGGA GAATTTGCTT TTGTTTATAC TGGAGTTATA 
    CGATGTGATC CTGATCCAGG CTCAGTTCGA CCTAGCCCCT GCTTATCTTT 
    GCTTGTGGGT CGTTGTCGCC GTCTTTGGTT ACGCTAGGAG AAGCATCTCT 
    CTTTCTTGCG TAGGTAATCA ACTATCTTAA TTTTTCTTTT GTGTCTTGAT 
    TATGTGCAAC ACCGAGTGAT GCGAATGGGA TGTGTTCCTT TCGATGTTTT 
    TTCTATATAA GCTCTGAAAC TTGGACTTTT GCAACAAATG GTTCGGGTGC 
    AGATGAGCTG TTTGACGAAA TGCCCAGGAG ATTCCTGCGT GCGTTGCATG 
    CCCAGCGGCG GTTTGACTCT ATTTTTCCTT TAGTATGGTG TCTGCTCTCT 
    GGTGATCTAA TGTACCATTT TCTCTTAACC TTGTTTTACC CAATCTTAAT 
    GCAAAGATGC ATAAAGAGAA CTCTGCATAT TCCTGTTTTC TCTTAACCTT 
    GTTTCAGAGA ACCTTGTTTT CTCTGAACTC TGCAAAAGAT TTTCTGCATA 
    TTCCTGAAAA AAGGAGAACT CTGCTCCGGT GCTTTTAACT AGACTTATAA 
    AGGCTTTGGC ATAGGATTCC TGTATTGGTT GATGCAAAAT CTGCTGGTAA 
    CAGTCAGCTA AATTCGCTTA AAAAGTACAC TTCTTTGGGT CTTCTTGCTA 
    GTGCAGGTAG AGAAGCACCA TGGCCTTCCT GGTTTCTTAG GTGGTAAACA 
    GGCAAAGAAA GTAAAGCACC AAGTGGCGCC ATTGCTGCAA TGAAATCAAA 
    TTATTATTAG CAAGTGGATG AAAGGAAAAG AATACACAGC CTGGAAGAGC 
    TTTCAACTTG AATCCCCTTG CAATTGTGTA ACACTACTTG TCCTTTTCAC 
    ATTGCATCAT CGTTGAAACA TTTGGATTTT AATACAAAAA TCATTGTGGG 
    TAGATTTTGC CTCAAAAAGT GCTTTCATAC TGTTTTAATT TTGTCAGGTT 
    TTTCAGACGT TTTGCAATAG AGAATGTCAA TGTCCATTGT GACAAAGGCA 
    GTTGGTGGCA AGAAAGGGAG GAGAATCTAT AACAGCTCTC TTCTGCAATC 
    TGCATTGCCC TCTCTGTTCT CATCAGGTTT TAGCCACACT GCTTCAATAT 
    CTCTTTCCAT CTTCCGTATT TAAGTGATCG GCACTCAGCA GCTCTGTGAG 
    ATATCTCTTC TGGGATCTGC AGTTTCAAGC ATCTCCCATA GGAGAGATCC 
    AGTGGGAATC CGTAGGTTCT AGCACTATGG GCACAGTTTT GGATGCTCTC 
    GCTTGGAAAT TCTTGGAAAA GCTGGGTCAA CTTATTGAGG ATGAGGTTAT 
    CATGACATTA AGTGTGAAAA GGGGTATTGA GAGCCTGAAG AAAAATCTGG 
    AATTCTTCAA CGCTGTTCAT GAGGATGCTG AGGCTCTGGC CATGGAGGAT 
    CCAGGGATAG ATTCATGGTG GAAGAACATG AGAGATGTTA TGTTTGATGT 
    CGATGACATC GTAGATCTTT TCATGGTTCA TTCACAGAAG CCCTTGCTGC 
    CACCAAGGCC GGTATGTTGC AATCAGCCCT TGTTCTCTAG CTTTGCAAAG 
    TTTTCATTTG ATCACATGAT TGCCAAAAGA ATTGATAATA TAAATGAAAA 
    GTTTGAAGAA ATTAAAATGA ACAAAGAGAT GTTTGGCTTG GAGAGAACCA 
    ACGGGCAACA AATCCAGATA ACAATTGTTG ACAGAAGTCA GACATCTCCT 
    GTAGATGAAC TTGAGGTGGT TGGAGAAGAT ATCAGAAGGG CTATTGATGA 
    CATCGTCAAA ATGATTGTTA GTAGTAACTA CAATGAAAGC AGGTCAACTG 
    TTTTTGGGAT CCAGGGGATG GGAGGCATCG GTAAGACAAC ATTAGCTCAA 
    AAGATATACA ATGAACAGAG GATAAGGGAG AAATTCCAAG TTCATATATG 
    GTTGTGCATT TCTCAGAATT ACACAGAGAC CAGTTTGTTA AAACAGGCAA 
    TCAGAATGGC TGGAGGAATT TGTGATCAGC TGGAGACTAA GACTGAGCTT 
    CTACCGCTTC TAGTGGACAC TATTAGAGGG AAGAGTGTTT TTCTTGTGCT 
    GGATGATGTT TGGAAATCTG ATGTATGGAT TGATCTTCTT CGTTTGCCTT 
    TCTTGAGAGG TTTGAATTCT CATATCCTTG TGACCTCAAG AAACCTGGAT 
    GTTTTGGTTG AAATGCATGC AACTTATACC CACAAGGTAA ACAAAATGAA 
    TGATTGCGAT GGCCTAGAAC TGCTGATGAA GATGTCATTA GGGCCATACG 
    GGCAAAGCAG AGAATTCAGT GGTGTTGGAT ATCAAATTGT CAAAAAGTGT 
    GATGGCCTTC CTCTTGCCAT CAAAGTTGTT GCAGGTGTTC TATCTACTAA 
    AAGAACAAGG GCAGAATGGG AGAGTATCCG AGATAGCAAG TGGTCCGTTC 
    ATGGACTTCC CAGAGAACTA GGAGGCCCTC TGTACTTAAG CTACAGCAAC 
    TTACCCCCTG AACTTAAACA ATGCTTTCTC TGGTGTGCTT TGTTGCCGTC 
    AAATTTTGTG ATACGTCGTG ATGCTGTCGC TTACTGGTGG GTTGCTGAAG 
    GTTTCGTGAC GGAAGTGCAT GGGTACTCAA TACATGAGGT TGCTGAAGAG 
    TACTACCATG AGCTAATCAG AAGGAATCTT CTGCAGCCAC GACCAGAGTT 
    TGTAGACAAA GGCGAGTCAA CAATGCATGA TCTATTGAGG TCACTTGGTC 
    AATTTTTGAC AAAGGATCAC TCCATATTCA TGAACATGGA ATATAGCAAA 
    GCCTTACCAA ATCTACGCCA CTTACGTATC AGCAATGATG TAGAAGAAAT 
    ACCTGCTATA GAAAAGCAAA AGTGCTTGAG GAGCCTCCTA GTTTTTGATA 
    ACAAAAACTT CATGAAAATT AATAAGGACA TTTTCAGAGA ACTCAAGCAT 
    ATCCGTGTCT TAGTTCTCAG TGGAACAAGC ATCCAAATCA TACCAGAGTC 
    AGTGGGAAAC TTCTTGTTAC TGAGGCTTCT AGATCTAAGC TAT

    Gene models with high sequence identity

    1. AT3G46730.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 8e-56; Score: 216.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 2.9e-10
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-09
    HMMPfam NB-ARC 2.2e-58
    FPrintScan Disease resistance protein 4.4e-19
    FPrintScan Disease resistance protein 4.4e-19
    FPrintScan Disease resistance protein 4.4e-19
    FPrintScan Disease resistance protein 4.4e-19
    Coil coiled-coil 0

    See the detailed result >

    AT3G46730.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Computational Description
    NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT3G46530.1); Has 14658 Blast hits to 14197 proteins in 483 species: Archae - 6; Bacteria - 489; Metazoa - 440; Fungi - 102; Plants - 13534; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR