K14403

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14403

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14403

Determination of introduced cDNA(s)

  • J023115C24 - Rice Full-length cDNAs - Original: J023115C24

    full reading [+] show sequence

    Nucleotide sequence: J023115C24 - full reading 
    GACAGCTTCC ACTCCACGAA AACCCTCTGC CTCCTTCGCT CGCTGCACCC 
    TCGTCTCGGC GATCCATCCA TGGCTGCCAG GAAGTTCTTC GTCGGCGGCA 
    ACTGGAAATG CAATGGGACA GGGGAGGACG TGAAGAAGAT CGTCACCGTC 
    CTCAACGAGG CCGAGGTGCC CTCCGAGGAC GTCGTCGAGG TGGTGGTGAG 
    CCCGCCGTTC GTGTTCCTGC CGCAGGTGAA GGGTTTGCTC CGGCCGGACT 
    TCTCCGTCGC CGCGCAGAAT TGCTGGGTGC GCAAGGGCGG CGCCTTCACT 
    GGCGAGATCA GTGCCGAGAT GTTGGTGAAC CTGCAGGTGC CTTGGGTGAT 
    TCTGGGACAC TCTGAGCGGA GAGCGCTGAT GGGCGAATCA AGTGATTTTG 
    TTGCTGACAA AATTGCGTAC GCACTTTCCC AAGGTATCAA GGTAATTGCT 
    TGCATTGGTG AGACCCTTGA ACAGAGAGAA GCAGGAACAA CGATGGAAGT 
    TGTTGCAGCG CAAACTAAAG CTATTGCAGA GAAGATATCC GATTGGACCA 
    ATGTTGTTTT GGCATATGAA CCAGTTTGGG CCATTGGAAC CGGCAAGGTT 
    GCAACCCCTG CTCAGGCTCA GGAGGTTCAT GATGGTCTGA GAAAGTGGCT 
    TGTGACTAAT GTTAGTCCTG CAGTTGCTGA ATCAACCAGG ATTATTTACA 
    GAGGCTCCGT AAATGGAGCA AACTGCAAAG AACTTGCTGC TAAACCTGAT 
    GTTGATGGAT TCCTTGTTGG AGGAGCTTCA TTGAAGCCTG AATTTGTGGA 
    CATCATCAAG TCTGCTACCG TCAAGTCTTC TGCTTAGTGT TCTGGGTTGC 
    AACCAGATGA TCGTAGGAGT TAATGCTGCC AATTTTAAGT TATGACATGT 
    TTGACCAGCT TGCTTTGTTA TATCTCGAAG TCAGTGAACT CCATATCGTT 
    CCATAGAGCA TGCAGCCACC TGTGGTTGCT TTTTTTCTTT TTGACTTTTT 
    CTCCCGAGAG GATCAGATGA ACTGAAAGTG CCGTTAATGT CTGTATTATC 
    AGAAGTTTGT TGATGGCTTG ATGCTATAAT AGTTGAACCT GATACTTCCT 
    GAGTG

    Gene models with high sequence identity

    1. AT3G55440.1 [+] show detail - triosephosphate isomerase
      E-value: 1e-105; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Triosephosphate isomerase 4.1e-94
    HMMPanther Triosephosphate isomerase 2e-153
    Coil coiled-coil 0
    HMMPfam Triosephosphate isomerase 4.5e-85
    ProfileScan Triosephosphate isomerase 79.27
    HMMTigr Triosephosphate isomerase 2e-126
    PatternScan Triosephosphate isomerase, active site 0
    Gene3D Aldolase-type TIM barrel 1.1e-87

    See the detailed result >

    AT3G55440.1

    Model type
    Protein coding
    Short Description
    triosephosphate isomerase
    Curator Summary
    Encodes triosephosphate isomerase.
    Computational Description
    triosephosphate isomerase (TPI); FUNCTIONS IN: triose-phosphate isomerase activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Triosephosphate isomerase, active site (InterPro:IPR020861), Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: triosephosphate isomerase (TAIR:AT2G21170.1); Has 11466 Blast hits to 11464 proteins in 3595 species: Archae - 48; Bacteria - 6204; Metazoa - 1205; Fungi - 243; Plants - 477; Viruses - 0; Other Eukaryotes - 3289 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR