K14419

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14419

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14419

Determination of introduced cDNA(s)

  • J033125G13 - Rice Full-length cDNAs - Original: J033125G13

    full reading [+] show sequence

    Nucleotide sequence: J033125G13 - full reading 
    GAAGCGATAG CAAAACAAAA TACAAACCAG AACAGTCTCA AAGCTTCGCC 
    CAAGCAGAGA AGAATGGCCG CCGGAGGAGG AGGAGGAGAC GAGCTGAAGC 
    TGCTCGGATT GTGGGCGAGC CCGTACGTCC TGCGAGCGAA ATTCGCGCTC 
    AGCTTCAAGG GCCTGAGCTA CGAGAACGTC GAGGAGGACC TCCACAACAA 
    GAGTGAGCTG CTCCTGAGCT CCAACCCGGT GCACAAGAAG GTGCCGTGCT 
    CATCCACAAC GGCAAGCCCA TCTGCGAGTC GCAGATCATC GTGGAGTACG 
    TCGACGAGGC GTTCCCTGAC GCCGGCGAGT CCCTTCTCCC CTCCGACCCT 
    TACGACCGCG CCGTCGCTCG CTTCTGGGCC GCCTACATCA ATGACAAGTT 
    CATGCCGGCG TGGCAGAAGG CGTCGTTGGG CCTCACGGAG GAGGAGAAGG 
    CGGAGGCGGT GAAGCAGATG CTCGCCGCGA TCGAGAACCT GGAGACGGCG 
    TTCAAGGAGT TGTCCAAGGG GAAGCCCTTC TTCGGCGGCG ACACCGCCGG 
    GTACCTCGAC GTCACGCTCG GCGCCGTGGT CGGCTGGGCG CGCGCCGGCG 
    AGGTCCTGTT CGGGAGGAAG CTCTTCGACG CCACTAGGAG CCCTCTCCTG 
    GCGGCGTGGA TGGAGCGGTT CGTCGCGCTG GACGCTGTCA AGGCGGTGTT 
    GCCGGACAAT GCCGAGCTGA TCGAGTATGG CAAGATGAGG ATGGCGCACT 
    ACGCCAAGCT TGCTGCCGCC TTGGCTGCTG CGAACAAGAA GTGAGCCGGC 
    GAAGCAAACC TGTAGTTGGT GTGTGTCCGT TCTCGTTGCT CGTGGTCTCG 
    TGGAGGATGA AAGCTGGTGC ACCATAGTCC TTCCACACCG TGAGGTTGAG 
    TTGTGACTTT TTTTTTCTTC CAGTGATCCG TTCGATCGGA TCGTCATGTG 
    ATTCTGGCGC ATTTAACTCA ATAAAAGAAA GGAAGAAGTT CAAATT

    Gene models with high sequence identity

    1. AT1G10360.1 [+] show detail - glutathione S-transferase TAU 18
      E-value: 4e-51; Score: 60.80

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Glutathione S-transferase, N-terminal 9.534
    ProfileScan Glutathione S-transferase, N-terminal 10.058
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 19.406
    HMMPfam Glutathione S-transferase, C-terminal 2.4e-06
    HMMPanther GLUTATHIONE S-TRANSFERASE 3e-25
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 3e-25
    HMMPanther GLUTATHIONE S-TRANSFERASE 4.3e-72
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 4.3e-72
    superfamily Thioredoxin-like fold 3e-10
    superfamily Glutathione S-transferase, C-terminal-like 3.2e-45
    superfamily Thioredoxin-like fold 3.4e-06
    Gene3D Thioredoxin fold 1.6e-12
    Gene3D Glutathione S-transferase, C-terminal-like 3.8e-49

    See the detailed result >

    AT1G10360.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase TAU 18
    Curator Summary
    Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase TAU 18 (GSTU18); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT1G10370.1); Has 5056 Blast hits to 5041 proteins in 1030 species: Archae - 0; Bacteria - 2429; Metazoa - 208; Fungi - 116; Plants - 1907; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR