K14420

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14420

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14420

Determination of introduced cDNA(s)

  • J023018C04 - Rice Full-length cDNAs - Original: J023018C04

    full reading [+] show sequence

    Nucleotide sequence: J023018C04 - full reading
    GGAACACAAA AGAAGGGGAG AAGGGGAAGG ATAGATAGAT CGCCGCCGCC 
    GCCGTCGTCT CCGCCCCTCT CCAGCCACCA GATCCAGCGA CCATGGGGCA
    GGGCACCCCG GGAGGCATGG GCAAGCAGGG CGGCGCCCCC GGCGACCGCA
    AGCCTGGCGG CGACGGCGAC AAGAAGGACC GCAAGTTCGA GCCCCCCGCC
    GCCCCCTCCC GCGTCGGCCG CAAGCAGCGC AAGCAGAAGG GCCCCGAGGC
    GGCCGCTCGC CTCCCCAACG TCGCCCCTCT CTCCAAGTGC CGCCTCCGCC
    TCCTCAAGCT CGAGCGGGTC AAGGACTACC TCCTCATGGA GGAGGAGTTC
    GTCGCCGCCC AGGAGCGCCT CCGCCCCACC GAGGACAAGA CCGAGGAGGA
    CCGATCCAAG GTCGACGACC TCCGCGGCAC CCCCATGAGC GTCGGATCCC
    TCGAGGAGAT CATCGACGAG AGCCATGCCA TCGTCTCCTC CTCCGTCGGC
    CCCGAGTACT ACGTCGGCAT CCTCTCCTTC GTCGACAAGG ACCAGCTCGA
    GCCCGGCTGC TCCATCCTCA TGCACAACAA GGTTCTGTCT GTGGTCGGAA
    TTTTGCAAGA TGAAGTTGAT CCTATGGTTT CTGTGATGAA AGTGGAGAAA
    GCTCCGCTGG AATCCTATGC TGACATTGGT GGGCTAGATG CTCAGATCCA
    AGAAATCAAA GAGGCAGTTG AGCTTCCTTT GACCCATCCT GAGCTATATG
    AAGACATTGG CATCAGGCCA CCCAAGGGAG TCATATTATA CGGAGAACCT
    GGAACAGGGA AGACACTACT TGCCAAGGCT GTTGCTAACT CCACATCCGC
    AACTTTCTTG CGTGTTGTTG GAAGTGAGCT TATTCAAAAG TATCTTGGTG
    ATGGTCCCAA ACTAGTCAGG GAACTGTTCA GAGTTGCTGA TGAGCTTTCT
    CCCTCAATAG TCTTTATCGA TGAGATTGAT GCTGTTGGAA CAAAGAGGTA
    CGATGCTCAT TCAGGAGGGG AGCGTGAGAT TCAGAGAACT ATGTTGGAGC
    TTCTTAACCA GTTAGATGGT TTTGACTCTC GTGGTGATGT CAAAGTTATA
    CTAGCAACAA ATCGCATCGA AAGTCTTGAT CCAGCATTGC TACGCCCTGG
    TCGCATAGAT CGGAAGATAG AATTTCCTCT GCCAGATATT AAAACTAGGC
    GGCGCATCTT CCAGATACAC ACATCTAAGA TGACATTGGC AGATGATGTG
    AACCTGGAAG AGTTTGTCAT GACCAAGGAT GAGTTTTCCG GTGCTGATAT
    CAAAGCAATA TGTACTGAAG CTGGACTTCT TGCTTTGAGA GAACGCCGAA
    TGAAGGTGAC ACATGCTGAC TTCAAGAAGG CAAAGGAGAA GGTGATGTTC
    AAGAAGAAGG AAGGTGTGCC GGAGGGTCTT TACATGTGAT GTGCTCACTG
    GTCGCCAGTG ACGGGGTGGG TAACCTTGTA GGACGAATAT ATATTTGATT
    TATCACATAG GCTATGCTGC CTTGGTTTGT AAAATACTTG TGAAATTTGT
    TTTGTTACTT CTTGGGATGG AGTTGGATAG AACAAATTGC ATTTCTC

    Gene models with high sequence identity

    1. AT4G29040.1 [+] show detail - regulatory particle AAA-ATPase 2A
      E-value: 0; Score: 750.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.5e-56
    Gene3D no description 1.1e-18
    superfamily P-loop containing nucleoside triphosphate hyd 1.4e-68
    HMMPfam ATPase, AAA-type, core 1.4e-40
    HMMTigr 26S proteasome subunit P45 8.9e-169
    HMMPanther 26S PROTEASE REGULATORY SUBUNIT 4 6.4e-241
    HMMPanther 26S PROTEASE REGULATORY SUBUNIT 6.4e-241
    HMMSmart ATPase, AAA+ type, core 2e-20
    PatternScan ATPase, AAA-type, conserved site 0

    See the detailed result >

    AT4G29040.1

    Model type
    Protein coding
    Short Description
    regulatory particle AAA-ATPase 2A
    Curator Summary
    26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,
    Computational Description
    regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR