K14421

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14421

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14421

Determination of introduced cDNA(s)

  • J023107F06 - Rice Full-length cDNAs - Original: J023107F06

    full reading [+] show sequence

    Nucleotide sequence: J023107F06 - full reading 
    GGCTCTGCTG TGCTGTGCTG CTAGGGTTTA GGCGGCGGCG GCGGCGGCGG 
    CGGCTGCGGC TTTCCGATTC CAATCCAACA AGAAGAAGAT TCGGAGAGAT 
    TGCCGGCCAT GTCTTCCACC GGTCGCCCCT ACGGCCGTCG CGGCGGCGCC 
    GCTCCCTCCT ACGTGCCGCG CCCCCGCGCA CCCAACCCCT CGCCATCCGC 
    TCCCGCTCCC GCACGGCCGC CGCAGCAACT GCGTAAACCG GTGTTCACCA 
    CCGTGGAGCG GCTGCGGCCC CAGAGCCACG GCCACACCCT CACCGCCCGC 
    GTCCTCTCCG CCCGCATCAT CCTCGACAAC CCTCCTCCCC GCGCTCGTCT 
    CGCTGAGTGC CTCGTCGGCG ACAACACCGG CACCGTCCTC TTCACCGCCC 
    GCAACCAACA AGTTGACTTG GTGAAGCCAG GCACCACGGT CATCTTCCGC 
    AATGCCAAGA TTGACATGTT CAAGGGGACC ATGAGGCTGG CAGTTGACAA 
    ATGGGGCCGG ATCGAGGTGA CGGACCCTGC CAGCTTTCAA GTTAAGGAAG 
    ACAACAACGT GTCGCTGGTC GAGTATGAGC TGGTGGATGT CGTCGACGAG 
    GATTGACTAC TTAGACTTTG ATTGGCTCTC GGGCTGTGGA CATAGATTTT 
    TGATGCAGCG GTAGCAGTAG GTTCATCTTA TCCTGGAAAG CTATTGAAAA 
    GATTTGGAGC TGGTTATTAC TTATGTACAG GGGAAGGTTC AACTGATGCT 
    TTTGTGCAAG ACCTGTTCTA TCATTAGGTT TGGTTTATGA AATGTGTTGA 
    TGTTGCCGGT GGTACCTAAA TCTAAATGTT GGCAAGCCTA GTGGACTTGT 
    TTCTGTCAAT TTAATGGTAT GGAGTTGGAT CTTGTGTCGC TGATGGTTCT 
    ACATATACGA TGAAGAATAT TTCTGGGATG TCTTACTACA CCTTGTTGTG 
    AGCTGCAATG TTTGCGTGCA TGTTTAACAA AGCTGTGTTA TATGTGTTTG 
    TTCACC

    Gene models with high sequence identity

    1. AT4G28440.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 1e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Nucleic acid-binding, OB-fold-like 8.5e-23
    Gene3D Nucleic acid-binding, OB-fold 2.8e-23

    See the detailed result >

    AT4G28440.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G33845.1); Has 214 Blast hits to 214 proteins in 47 species: Archae - 22; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR