K14428

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14428

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14428

Determination of introduced cDNA(s)

  • J013042K21 - Rice Full-length cDNAs - Original: J013042K21

    full reading [+] show sequence

    Nucleotide sequence: J013042K21 - full reading 
    GTCCGTTTAA GCCCCTCCCC ATACTAATCA CGGCAAAAAC CCCTTGCCGC 
    CGTCGACGCC TTCCCGCCGC CGCCCGACCT CGCCGTCGCC GCCGATCTCG 
    CCGGCCACCT AGGTGGTCAT GTAACTGATT CCGCGCTCTA TCTTCCTCGC 
    CTGTCTCCGC AGGTATGCTA CACGGGCGCA AATGCGTGAG CCGGCTGGCC 
    GCTGGCGGCG TGGTGGAGGC ATCGCCGGCG GCCACCGTGG AGAGGCCAGC 
    CTCGTACCTC CACCAGCTAG CAGTGTTCCA GACCAGCAGG AGCTTGGCTC 
    TGCTGGCGCG GAACGTCCAT AACCAGTTAC CGGTCCAGCA GCGATCCCTC 
    TATGATTCAG CAAGCACCTG AAGCGTGCCA GTCTTGCGCT GAGCGCTGCT 
    ATTTCCCACT CCTTTGAAAG CTTCTCAAAC GGAGTCCACA ACCGCTCTTC 
    AAATTAACAA CTGCTGCAGC ACGTGGCCAA ATGGTTTGCT GAATGTCAGA 
    CGCATCTATG TGTTCAGCCC ACATGCATAC CTCACCACCA AGAACCAACT 
    TCTGCTGTGC CGGGTTCTTG ATATTTCTCA GTGGTTCATT CATATAAAAT 
    CCATCCCATG TAACTTCCAA GTGATCTAGG TACCACTTAT CCTGGTTGCT 
    CACAATGCAT CTCAAACCAG CAGCAACAAC TTTCTCTGCA ACTCCACCTC 
    CAAGCCTGTT ATAATTTGTG GTGAAAAATA CTAGCTGTTA ATTTCCAATA 
    GCTGCACAAA CAGATGATTT CTGGCTGGGT CCTCCTAATT AGGAGAAGAA 
    ACTGCACTAT ATAATGGTAT TGAAACTTTT CTTGCAATCC TTTCACCTTT 
    TCTTAATAAA GGTTTGCAAT CCCATTACTT CAATAAATTT CCTTGTTTAA 
    ACAACATTCC TCTAGTTTTA TATTACTTGT TGGACATTGC AAAATACAGA 
    TACTACCATA AGTTGTTCTC TATGAATGGG CATTTACTGA CGTGTAAACA 
    AACTATGCAA ACTAATTTGT TCAAAGAGAA ATTTAGTGCC ATCACAATGA 
    TGTATAAATT GACAAATACC ATCCAATGTA AGCATAACAT ATGGTCGCAG 
    GACCAATATT AGAAATATCT AATGACATAT TCCAGCTTGG TGATCTTTGC 
    CTTCTTCAAA TGAGAATGTG CTATATTTGA GATTTGGCAA ATGTGGTCAT 
    TGTTTCTTAT AATAGGCATG ACAATATAAT TTGGCAAGAG CATACAACTT 
    TGTTTTATTT TCTTTTCCTA ACAAGGATGC TGATAATTTT TTATATAATG 
    ACAATCAAGA GGCAGTTAGG AAATACCAGT TATGCACCAC AGTTCTGCGG 
    TCTAGTTTGT CTCCAAAGTT GTTAAAGGTT TCTTCCCTAC AAGGACAAGA 
    AAGTGTATCA ATAGCTATTT GAAAGATCTA GATCTGCAAA ACCAAGTCAC 
    ATACCAGTTA ATAACTTCGT AGCCATGTGA TTTTGCTATC TTTTGAGCTC 
    TCAATACAAA ATATCTGTAG GCATCAGATT CTTTCATACC ATGTTGGGCC 
    AACCTGCACA CCAGGAAAAA TACTTCAGAT TAGATCAAAT GACTGATCAT 
    CCCTGCTACA GAAGGACCTG GTGATGGTGG TGAGTCGGCC ATCACCAACA 
    CATCTACAAT TGGTGGGATC TTCTGCAGGT AGAAAAATAG ATGATAATGC 
    ATATGTCATG GTTATTTATG GGTTGATGCT TGGTTGCAAA ATGTTTTGGC 
    CTCAGAAACA TATATAATTT TCATGTTTAG TTCTTATTTT TTTAATCTGT 
    TCCAAGGCTC GGGTATTTTG CTACAATAAA GAGAAAATAT TGTCAATAAG 
    TGCATATCAA GTATGCTGTT GCTCTTATTC TTTATACTAG TTCTAGATAA 
    GAGCATACCA TGCTTTAACG CGTGGTGTGG AAGTCCAGCA ACCTGAAATT 
    CATAGTGAGT AATTATTAGA TTACTAAACT ACTATATGAT ATGAGATCTG 
    CTGCTCTGCA GGGGAGATAC TTTTGCAGAC TTACTTGTAT TGACCTCATC 
    ACCTCCCAAA TGGACAAACT TGAACTTAAA AACCTTGCTG AAATCTGAAA 
    GAGCATCAAA AGTTATTAGT GAATATTATA CAAGATCATC AATTTGTTTT 
    TCACAATATA TTCATTATTC GGTTCGTTGA ACTGCTTTTT TTTTTCCTTT 
    TGTTGGTAAG TATAAGATAA ATGGCTGTTT TTTTCTCTTT CAAAGTAATA 
    AAAGTACCAC TCAAAATATA ACGTGATTTC TGTTGGTAAA CCGTGAATTA 
    CCTGAAAGAA TTCCATTAAT CACTTGGAAT GTAGATTCGC TGCTGACATC 
    AAGTGGTTCT TTACAAGTAG CTGATGGCCA CAACGACGGA TAACCAACAC 
    CCCTAAAACA AAAAGAAATG CGCAATTTAT TTGCAACCTT TTGATATTCC 
    TACTGTCATA TCTAGTTAAA TAACTTCATC CGTAAGGCAC TGTGCTTTCT 
    GGATTTAAAA GGTATACCAT GAGTACAACA AAAACAAAGG ATTCAGGTTT 
    TCATCAGTAA AACCTGAATA GTCATGGAGC ATATGCTAGA GAAGAACAGC 
    ATTGGCATAT TAAATACTTA CCATGAGAGA GCATGGCCAG GAACATCAAT 
    CTCAGCTAAG ACATTGACAC CTCGTCGTTC AGCATACCTG CAGATTATTG 
    ATAAGTTATC TTACCTTGGT TAAATCCAAC AGCATAGCTA ACTGATCTCT 
    AAATTGATCA CATCATTCTC CAAAGAAGGA ATGGGTTTTA GAGTTTTGTT 
    TTTTATTTTC TGCTGAGTTC CCTTTGCAAT ATTTATATAA ATTACTTAAC 
    GTGGTTTTAC TGCATGCTCT TAGCTCCTGT TACTTCATAG TGAAGGTAAA 
    TAAATTCTTA TGTCCAGCCA TAACCTTAGA GTGATATTTG CTAAATTCTG 
    CTCTTTCGCA TGAAAAATGA AAGACAGAAA AACTCACTGA ACAATGTCGA 
    TAGCATCATC CATTGTATAT CTCTCTGAGT AAGAGTATGC ACCATTCCAT 
    AATTTTGGGT ATGAAGGTAT TTCTATAGGA AATGACTGTT CATCCACGAT 
    ATGCCAATGA AGAACATTCT GCATGATGAT AGAGTAAGCA GATTATATGA 
    TGCAACTAAA ACTAAAGGAA TATCTGGAGA AGGACCATTG CAATGGAGAG 
    AATTATCAAT CAAGATTGAA GAACTGGTTT CTTGTGAAAA GATCAAACCT 
    ACCAACTTGC TGTAGGTCAT CGAATCGATT ACGCTTTTTA TTACTGGGAC 
    AGGAAGGTAA TGCCTTGAAG TATCTGTAGG ATGCCAGTGC ATTGAGTTGA 
    AAAAAGATCA GGTATTATCT TTCCTCAAAC TATTTGAGGA CAATAGTAGA 
    TGTATCAGAT AAATCCTTTA AAAGAAAGAG ATATCAGACG CTATTTTTAC 
    ATGCACAATA TTTACTGATT CTTCATATAA GCCTAGTATG GAACATGTGG 
    AGTAAGTATG AGCATCCATC TTAGAATTAT TCATGATGGT GGTTAACAAC 
    ACC

    Gene models with high sequence identity

    1. AT1G65590.1 [+] show detail - beta-hexosaminidase 3
      E-value: 3e-39; Score: 64.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 20, catalytic core 0.0000000000057
    HMMPfam Glycoside hydrolase, family 20, catalytic core 0.00000000000065
    HMMPanther Glycoside hydrolase, family 20 2e-16
    HMMPanther Glycoside hydrolase, family 20 1.6e-19
    Gene3D Glycoside hydrolase, subgroup, catalytic core 0.0000000001
    Gene3D Glycoside hydrolase, subgroup, catalytic core 0.00000000000011
    superfamily Glycoside hydrolase, catalytic core 0.0000000000012
    superfamily Glycoside hydrolase, catalytic core 0.00000000000025

    See the detailed result >

    AT1G65590.1

    Model type
    Protein coding
    Short Description
    beta-hexosaminidase 3
    Curator Summary
    Encodes a protein with beta-hexosaminidase activity. Located on the plasma membrane.
    Computational Description
    beta-hexosaminidase 3 (HEXO3); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase, subunit a/b (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1); Has 3849 Blast hits to 3760 proteins in 723 species: Archae - 6; Bacteria - 2490; Metazoa - 475; Fungi - 225; Plants - 125; Viruses - 0; Other Eukaryotes - 528 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR