K14442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14442

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14442

Determination of introduced cDNA(s)

  • J023023L10 - Rice Full-length cDNAs - Original: J023023L10

    full reading [+] show sequence

    Nucleotide sequence: J023023L10 - full reading 
    GTCCGTCTCC GCCTCTCTCG CTCGCGCCGC CGGCCGCCGG CGATCCTCCC 
    GCCGGAGCAC GCTCGCCTGA CCTGGCTGCC TCCGCCGCTT CGAATCGAAG 
    CCCGCAGCTC CCCTCCCTCT CTTCCTCTCC AGACAGTCCC CTACTCCCCT 
    CTGCTGCACT GGACTTGGGG TGGGGTGGAG CGGGAGATCC ATCCAAGATA 
    GCTCGGATGA GAACAAGTAC CTGAGGTCCC CTCCGATTAT TCTCCAGAAG 
    GTTGTAGAAG CTTGGAGGAT GCCGAGGCGG GAGGGTGGTC GCTCTCGCTC 
    CGCCGCCTAC CTCGTCCTCT TCGCTTCCTG CCTTTTAGCT GTTGCGGCGG 
    CATCACACCA GGAATTTCAT GAAGCTGCTG GATCCAGAAC TCTTCTTATG 
    TCACATGAAC ACACAAATCA AGTGCATTGC TCAAGGGAAA GAAGCCGTGC 
    AGCTTGGAAA GCTATTGATG AGTATTTGAT GCCCTTTGTG GAAAAAGAGA 
    AATATGAACT CCCAAGCAAA TGTAGACTTC ATCCTGGTAA TGACATGTTT 
    CGGGAACAGG AGCAGCATAA GATTCACTTT GATATAAATG AATGGCGCTG 
    TGGTTTCTGC AAGAAAGCCT TCCGAGCAGA GAAGTTCCTT GATCAGCATT 
    TTCACAATCG GCACAATAAT CTTGTGGATA ATAGTCAAGG AAGATGCTTG 
    GCTGATCTAT GTGGAGCACT TCACTGTGAT CTGATGTTGG AGTTTAAGAA 
    ACCAAAGAGT AAATGCAGTG CAACTGCAGC TGCAAGGAAT CGTCATCTTT 
    GTGAGAGCCT TGCAGATAGT TGCTTTCCTA TTAATCAAGG GCAATCTGCC 
    AGCCGTCTTC ATGAATTTCT CTTGCGCCAA TTCTGTGATG CCCACACATG 
    CAAGAATGGC TCTAAACCTT TCCCCAAAGG TGGCAGGAAA CAAACAAACA 
    GATTCTACCT GGCTCTCTGT GCCTTAACAA TAGTACTTTT GCCACTGTTC 
    TATCTCATAG TATTCTTGCA CCAGAGGGAA ATGAAGAAAG GCGGTCAAAA 
    TTTAAGACGA ATTTCGAAAG TTGTCCAAAA GAAAAAACCA TCTTAGGTAC 
    CTAATTCCAT GCCCTGCTTC TTCCCTATGC AGCCCCTCAT GCAGATGCAA 
    TCGTCAAGAA GCAAACGTGT GCTTTTTATG TGAGGTCAAG CAAGATAATT 
    TTTCGATGCC TTGCCCAAGC TGGAGTCTTG TTGACCTCTG TAGTTCATCC 
    CTTGAAATGT GGGTTTACAT GACCGTTTAC AGACAATCTC ATGAGACTAT 
    ATGTACATTG AAGAATGAAA ATGTGTATCC AATATTTAGT AGGCTCTAAT 
    TTGAATCCTA TGGGCTTAGA TTAATGGAAT AGAAACATCC CCATATAATT 
    TGTAATATTT GCAAGAGGCT TGGAGGTAAT TGTCATT

    Gene models with high sequence identity

    1. AT5G63280.1 [+] show detail - C2H2-like zinc finger protein
      E-value: 2e-91; Score: 333.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZINC FINGER PROTEIN-RELATED 1.9e-77
    PatternScan Zinc finger, C2H2-type 0

    See the detailed result >

    AT5G63280.1

    Model type
    Protein coding
    Short Description
    C2H2-like zinc finger protein
    Computational Description
    C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G40710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR