K14503

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14503

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14503

Determination of introduced cDNA(s)

  • J023031I17 - Rice Full-length cDNAs - Original: J023031I17

    full reading [+] show sequence

    Nucleotide sequence: J023031I17 - full reading 
    GCTTTTATCT TCCGATGAGG AATTAGTTAG CTCTCGAACA GTAGTACGAG 
    ATTTGTGCAA GTTGTGGTCC TGTCGTCATC CTGTGGAGTT GTGGTGAGTG 
    TTTGACGAAT TTTTTTTTTT TTTGGCGGCT CGATTGCAAC CCGCGGCCCG 
    CAACAAATCC GACGCCAAAT CGGACACGGC CGGCGACTCC GGCGAACCAC 
    CACCACACAC CAATCCTCCT CCTCCTCATC GCCGCCTGCG ACGGCGAGGC 
    GGCGAGCGAT GGATTCCCTG GGCGTGCTGC TGGTGGCGCC GATGAACGCC 
    TACCTGGAGC AGGAGCTGGA CCGGCGGTGC CGCCTCTTCC GCCTCTGGGA 
    GTCCCCCGCC GACCGCCGCG ACGACTACCT CCGCGCCCAC GCCTCCTCCA 
    TCCGCGCCGT CGTCCCCTAC GCCCTCCAGG GCGTCGACGC CGCCATGATC 
    GACGCCCTCC CCTCCCTCGA GATCGTCTCC TCCTTCTCCG TCGGCATCGA 
    CCGCGTCGAC CTCGACGCGT GCCTCCGCCG CGGGGTCCGC GTCACCAACA 
    CCCCCGACGT CCTCACCGAC GACGTCGCCG ACCTCGCCGT GGGGCTCGCC 
    ATCGCCGCGC TCCGCAAGAT CCCCCAGGCC GACCGCTACG TCCGCGCCGG 
    CAAGTGGAAG TCCAAGGGCG ACTTCACGCT CACCACTCGG TTCAGTGGCA 
    AGAGAGTCGG CATCATCGGT TTGGGCAGGA TCGGGCTCGC CGTCGCGAAG 
    CGAGTGGAGG CCTTCGACTG CCCGGTGAAC TACTACCAGA GGACGAAGCA 
    GGATCACCCC GGCTACACCT ACTACCCGTC GGTGGTGGAG CTGGCGGCGA 
    GCAGCGACGT GCTGGTGGTG GCGTGCCCGC TGAACGAGCA CACCCGGCAC 
    ATCGTGAACC GGGAGGTGAT GGAGGCGCTG GGGCCCAGGG GCGTGCTGAT 
    CAACATCGGC CGGGGGCCGC ACGTCGACGA GGCGGCGATG GTGGCGGCGC 
    TGGCCGACGG CCGGCTCGGC GGCGCCGGGC TGGACGTGTT CGAGGACGAG 
    CCGAACGTGC CCGAGGCGCT GCTCGGGATG GACAACGTCG TGCTGGTGCC 
    GCATGTGGGC AGCGCGACGC ACGAGACGCG CACGGCCATG GCCGACCTGG 
    TGCTCGGCAA CCTGGAGGCG CATGTCGCCG GCAAGCCGCT GCTGACGCAG 
    GTGGTGTGAG CTAATTGAGT GACTGGATGA TTCTGATTTG ATTGATTCCA 
    AAGCAGGTGC AATTCGACAA AATGTAGTAT GTACTGTTTC AGGATGTGAA 
    AAATCTGTTT TCCCTTTTTG TAAACACGGT CGGTCTGGGA CGATCCAGTA 
    ATAACGATTT AATATTTGTC ATTGGAAATG TGAAAAGTGT GTTGGGC

    Gene models with high sequence identity

    1. AT1G79870.1 [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
      E-value: 2e-90; Score: 330.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLYCERATE DEHYDROGENASE 1.4e-151
    HMMPanther 2-HYDROXYACID DEHYDROGENASE 1.4e-151
    Gene3D NAD(P)-binding domain 3.7e-55
    superfamily NAD(P)-binding domain 7.3e-58
    superfamily Formate/glycerate dehydrogenase catalytic dom 1.7e-32
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 4.1e-55
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7.6e-26

    See the detailed result >

    AT1G79870.1

    Model type
    Protein coding
    Short Description
    D-isomer specific 2-hydroxyacid dehydrogenase family protein
    Computational Description
    D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR